TCONS_00022481-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022481-protein
Unique NameTCONS_00022481-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022481-protein ID=TCONS_00022481-protein|Name=TCONS_00022481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
LVLRRKLDYEKTQRIELTLTNKTNPESLIYNYIIVLDITDVNDNAPSLKV
SPVFPRITTNFPKGSLVSHVGVQDLDSVSQTFTFSINNGDPKKLFTIDDQ
GSIYTTQCLGTDAVGQYRLGIRVKDGVFIANKTLMVQVHKASDKDFDNNC
GLECNPITFSVTSTANGDVTFTNVEQNGQILNQTQLQTIVGDPQSTEYSD
LSNGIQTSLVEFFERKYSLIRLNVTNMTIVDQLQKRQRRSADPEAFLSAQ
YIFEVKTTDATLQELNPISQNETIEFTKSSKYRLHTNDQLSVVSDVDECQ
TNLDQCDVNAYCMIYPNVISYTCQCKDQYEGDGFECNKIVDKVDKNLMVA
IGVSIGGGVLLIIVVVLVVVYCKSKSRYFRDLKRLNANTQAG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012605XLOC_012605Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022481TCONS_00022481Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024731EGF_dom
IPR020894Cadherin_CS
IPR000742EGF-like_dom
IPR015919Cadherin-like
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.60coord: 48..142
e-value: 9.9E-15
score: 54.3
NoneNo IPR availableGENE3D2.60.350.10coord: 1..47
e-value: 8.3E-6
score: 24.8
NoneNo IPR availableGENE3D2.10.25.10coord: 302..323
e-value: 5.5E-7
score: 29.1
NoneNo IPR availableGENE3D2.10.25.10coord: 324..347
e-value: 0.005
score: 16.7
coord: 254..301
e-value: 0.044
score: 13.7
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 1..54
score: 8.84
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 57..158
score: 11.712
NoneNo IPR availableCDDcd00054EGF_CAcoord: 295..332
e-value: 5.73582E-4
score: 36.4606
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 60..139
e-value: 6.30186E-8
score: 48.849
IPR024731EGF domainPFAMPF12947EGF_3coord: 299..336
e-value: 3.7E-8
score: 33.3
IPR020894Cadherin conserved sitePROSITEPS00232CADHERIN_1coord: 36..46
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 295..335
score: 13.936
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 41..138

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022481-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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