TCONS_00022432-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022432-protein
Unique NameTCONS_00022432-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1030

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022432-protein ID=TCONS_00022432-protein|Name=TCONS_00022432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1030bp
MAAEVDGESGKTGENQNKENGQDTLETDSKTVQNETITPVELKETIEENL
SEKNSVEIDDNVKGFKDEKSENLIDLTNENDVSRDEMNITNDVSRDELNI
TNDVSRDELNITNDVSKDELNITNDEEERTNERTNDTNDEASTSEDRSNQ
EERFRVDRKQLEALLKDVNQDGTSSGSIFFQKIEKATNTAISWPAKLKIG
AKTRKDPYIKVTGLPEDRQSAKQMVLSIMDSKSTRVTLKMDVSFADHSHI
IGKGGNTIKKVMKDTQCHIHFPDSNRTSSEKSNQVSIAGPPFCVESARRQ
IRELLPIVLKFEIPQAVTIPDSSSPVIHSISHQLSVNISFQQQLRSYSYV
GCVKGLHSDPFHVRDAVLKVLEHLTGTVPVTVPVTTQVEIDAKHHPYVLG
PNGANIRKIQQATGASIRFPDPNDPNIRKSTVTITGTIESAVTAKVYLLQ
YLPLILMFDVRDGESDHLLEQNTLNQLMANYDVQITVKPKPRQYCKSIIV
KGHEKNALNIYKTRMHLIGEDPNNMPHLLTPLATLVLPSQAANTQMPMYN
GMHQQHPHQPIAQHPNIGAVTIDTSSSTSTITQQTNTQLISPPLQSSSPQ
EQQSQSPPNRYTSMSPVGQKIVGIEMKIKRMSLDASASGKLLSDTSSSES
LSARDGGLSGSKSAESLLDALRQKKQETITTTKEIESLALSGSWNRQSAN
RPSMRRKSSLAVDAGLNRSQDDLEGSSNLSLTSNHLINNVGMQSNPKFNV
DDYEARKMKAKNAMQSQVKLGKVRTPTDAWSGYGFSNSMPESAIKELWNN
RERRANKSPLAMTGHSNVNHPKTMASPTTSLDSSVSSSGSSSNSAHHGGM
GGHQSPPIAKPIRRPGPPPGLADSRNAMDNIMMMNSSGSDYTSMLSPPDS
SANQMASNNTQNTLSNTSNPYANITEINELFTLLGLEQYITAFEKEEVDL
QTFMSLTDEELKELNVTKFGARKKMTNAIKDLQYAQNQNSWNHHNNNGLP
STSLPSSLSNGLYKQQPIHAFDVAAHSLRW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012581XLOC_012581Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022432TCONS_00022432Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR001660SAM
IPR004088KH_dom_type_1
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005515protein binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 117..137
NoneNo IPR availableCOILSCoilCoilcoord: 66..86
NoneNo IPR availableCOILSCoilCoilcoord: 151..171
NoneNo IPR availableGENE3D1.10.150.50coord: 923..997
e-value: 3.6E-16
score: 58.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 639..661
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 809..914
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 590..616
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..154
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 383..448
score: 15.452
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 235..301
score: 15.368
NoneNo IPR availableCDDcd02394vigilin_like_KHcoord: 389..449
e-value: 1.65541E-14
score: 69.0777
NoneNo IPR availableCDDcd02394vigilin_like_KHcoord: 237..302
e-value: 1.9188E-16
score: 74.8557
IPR004087K Homology domainSMARTSM00322kh_6coord: 234..306
e-value: 6.3E-17
score: 72.2
coord: 382..453
e-value: 7.4E-15
score: 65.4
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 919..985
e-value: 1.9E-10
score: 50.7
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 934..982
e-value: 3.0E-13
score: 49.9
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 922..985
score: 12.287
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 149..233
e-value: 1.1E-4
score: 21.5
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 379..452
e-value: 6.1E-16
score: 57.4
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 234..306
e-value: 7.0E-20
score: 70.0
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 385..448
e-value: 1.4E-14
score: 53.5
coord: 238..303
e-value: 4.8E-13
score: 48.6
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 228..305
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 383..452
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 921..988

Blast
[Close]
BLAST of TCONS_00022432-protein vs. Swiss-Prot (Human)
Match: BICC1 (Protein bicaudal C homolog 1 OS=Homo sapiens GN=BICC1 PE=1 SV=2)

HSP 1 Score: 404.831 bits (1039), Expect = 4.843e-125
Identity = 199/373 (53.35%), Postives = 274/373 (73.46%), Query Frame = 0 
Query:  151 EERFRVDRKQLEALLKDVNQDGTSSGSIFFQKIEKATNTAISWPAKLKIGAKTRKDPYIKVTGLPEDRQSAKQMVLSIMDSKSTRVTLKMDVSFADHSHIIGKGGNTIKKVMKDTQCHIHFPDSNRTS-SEKSNQVSIAGPPFCVESARRQIRELLPIVLKFEIPQAVT---IPDSSSPVIHSISHQLSVNISFQQQLRSYSYVGCVKGLHSDPFHVRDAVLKVLEHLTGTVPVTVPVTTQVEIDAKHHPYVLGPNGANIRKIQQATGASIRFPDPNDPNIRKSTVTITGTIESAVTAKVYLLQYLPLILMFDVRDGESDHLLEQNTLNQLMANYDVQITVKPKPRQYCKSIIVKGHEKNALNIYKTRMHLIG 519
            EERFRVDRK+LEA+L+   +    SG  FFQKI + TNT I+WP+KLKIGAK++KDP+IKV+G  ED + AK+M++S++D+KS RVTLKMDVS  +HSH+IGKGGN IKKVM++T CHIHFPDSNR + +EKSNQVSIAG P  VESAR +IRELLP+VL FE+P A     +PD +SP I  IS   ++++SF+Q+ R Y     V+G  ++   V++    +LEHL G++   +PV+TQ++I A+HH +++G NG+NI+ I Q TGA I FPDP++P  +KSTV + GTIES   A+ YL+  LPL+LMFD+++   +  ++   + QLM   DV I++KPKP+Q  KS+IVK  E+NALN+Y+ R  L+G
Sbjct:   48 EERFRVDRKKLEAMLQAAAEGKGRSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMIMSVLDTKSNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRIRELLPLVLMFELPIAGILQPVPDPNSPSIQHISQTYNISVSFKQRSRMYGATVIVRGSQNNTSAVKEGTAMLLEHLAGSLASAIPVSTQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQ-KKSTVYLQGTIESVCLARQYLMGCLPLVLMFDMKE---EIEVDPQFIAQLMEQLDVFISIKPKPKQPSKSVIVKSVERNALNMYEARKCLLG 416

HSP 2 Score: 115.161 bits (287), Expect = 6.286e-26
Identity = 94/291 (32.30%), Postives = 147/291 (50.52%), Query Frame = 0 
Query:  752 DYEARKMKAKNAMQSQVKLGKVRTPTDAWSGYGFSNSMPESAIKELWNNRERRANKSPLAMTGHSNVNHPKTMASPTTSLDSSVSSSGSSSNSAHHGGMGGHQSPPIAKPIRRPGPPPGLADSRNAMDNIMMMNSSGSDYTSMLSPPDSSANQ-----MASNNTQNTLSN-TSNPYANI------TEINELFTLLGLEQYITAFEKEEVDLQTFMSLTDEELKELNVTKFGARKKMTNAIKDLQYAQNQNSWNHHNNNGLPSTSLPSSLSNGLYKQQPIHAFDVAAHSLRW 1030
            DYE +K+ A  AM  +  + +VRTPT+ WSG GFS SMP   IKEL     RRAN          +V++  TM   TT+ + S  S   S++  H GG                      ++S N  D   +   S S++ + +  P    N+     ++S+N  + +S+ T +   N+      +++ ELF+ LGL +Y   F+++E+DLQTF++LTD++LKEL +T FGAR+KM  AI +L    N+N      +    ++ L    S  L +Q   +  D+A+ S RW
Sbjct:  730 DYEQKKLLATKAMLKKPVVTEVRTPTNTWSGLGFSKSMPAETIKEL-----RRAN----------HVSYKPTM---TTTYEGSSMSLSRSNSREHLGGG---------------------SESDNWRDRNGIGPGSHSEFAASIGSPKRKQNKSTEHYLSSSNYMDCISSLTGSNGCNLNSSFKGSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISEL----NKNRRKLFESPNARTSFLEGGASGRLPRQ---YHSDIASVSGRW 974
The following BLAST results are available for this feature:
BLAST of TCONS_00022432-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BICC14.843e-12553.35Protein bicaudal C homolog 1 OS=Homo sapiens GN=BI... [more]
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