TCONS_00022319-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022319-protein
Unique NameTCONS_00022319-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022319-protein ID=TCONS_00022319-protein|Name=TCONS_00022319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=600bp
TKQEIKKKLNTMHKPTAIRPLGMKPAATSRPPGVSASVLPPGISKPPEQY
TEYKLRVPKNLVKRYNVMKINSPRPIKLDQVKEANMVRKTKKQVYVEDDT
VAMPTTGAGSVYNYERKEEARRKRRGYITRKISPEDLPYALRLNGKGGKR
YTGRKEPILDHSAYFIITQSPDGVFEAVPVQAWYNFMPDIDYATLSADQV
EQEFSKRDRRMNAYQEKYGLKPADEESGGSKVQRRADGSGLVIHDDDLDE
IDNEFDDPPSDSERGATKKGLSLCYCFERGVNKKEKGGAGKNKKNIYGGK
KKKGRDEDDFKQDSDEEEEADMLESKEVDYMSESSSEDELKEMDDEPDPE
KASTKQKAKDDLNLFSDTSSEDEDDEEEDKQLNQAGKQLKAMLKSESGER
SSDEEDDDEDIDDQYSKNAMLIQGKDGKKKKKNGSNNGSKPTSRSSTPVQ
HQKDQDSSTSDTLSQAAKSLKDAGSKRGHDSSSVPSPGSKKQKFNSSVSS
GGRSNSPLTVPSSAGNDRSASPAVRSSTPSDGHNITESAIRRYLTHKPMT
TADLMRKFKPKKTGLSKEQTVSAIAAILKKIQPHQEKIEGKLYLSIKNKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012517XLOC_012517Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022319TCONS_00022319Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR008851TFIIF-alpha
IPR011039TFIIF_interaction
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0032968positive regulation of transcription elongation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 599..600
NoneNo IPR availableCOILSCoilCoilcoord: 197..217
NoneNo IPR availableGENE3D3.40.190.10coord: 283..403
e-value: 4.7E-4
score: 19.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..537
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..45
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 530..597
e-value: 1.0E-25
score: 88.8
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 527..598
IPR008851Transcription initiation factor IIF, alpha subunitPFAMPF05793TFIIF_alphacoord: 44..597
e-value: 1.1E-88
score: 298.0
IPR011039Transcription Factor IIF, Rap30/Rap74, interactionSUPERFAMILY50916Rap30/74 interaction domainscoord: 47..207

Blast
[Close]
BLAST of TCONS_00022319-protein vs. Swiss-Prot (Human)
Match: T2FA (General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.474e-19
Identity = 62/170 (36.47%), Postives = 92/170 (54.12%), Query Frame = 0 
Query:  429 KKKKNGSNNGSKPTSRSSTPVQHQKDQDSSTSDTLSQAAKSLKDAGSKRGHDSSSVPSPGSKKQKFNSSVSSGGRSNSPLTVPSSAGNDRSASPAVRSSTPSDGH-NITESAIRRYLTHKPMTTADLMRKFKPKKTGLSKEQTVSAIAAILKKIQPHQEKIEGKLYLSIK 597
            K+++  S   S+  SR  TP      +  STS TL  AA  L+     +G   S +P+  +K+ + +             T P S     +  P    +TP+ G   +TE A+RRYLT KPMTT DL++KF+ KKTGLS EQTV+ +A ILK++ P ++ I  K++ S+K
Sbjct:  371 KRERKPSGGSSRGNSRPGTP----SAEGGSTSSTLRAAASKLE-----QGKRVSEMPA--AKRLRLD-------------TGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLK 516
The following BLAST results are available for this feature:
BLAST of TCONS_00022319-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2FA7.474e-1936.47General transcription factor IIF subunit 1 OS=Homo... [more]
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