TCONS_00022274-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022274-protein
Unique NameTCONS_00022274-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022274-protein ID=TCONS_00022274-protein|Name=TCONS_00022274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=786bp
MSEVDRRRDERDDRDRDRGRDERRDRDRERDRDRDKYKEKSSRDKKRDRH
RSRSRSRDRRDRRSRRSRSRSRDKDKDTDSRNKEKSKLLENKLATEELED
GEWTANTKKEPLSLEEMIMKREEEKKALEKPKFLTKEERAAEALKKRQEQ
VEAQRQKLQEERDARQQLMKDADKTRDGGRYGDRHRRDRDYEERDRRRDE
GRTAREQEKDKEKESDAIKQRYLGGVKKKKKIRRLNDKKFVFDWDTGEDT
SQDYNTLYRERHEAQFFGRGHKAGIDIKAQKKEGKFYEKLMEDRRSESEK
QQEKKNQQRLLNKEDQLALKDRHWKKKSLTEMTDRDWRIFKEDFNISAKG
GKIPPPMRYWKEGKLPPDIIDVIKSNGYTDPTPIQRQAIPIGLLNRDIIG
IAETGSGKTAAFVIPLLVWITGLPEADRASVGDAGPFAIILAPTRELAQQ
IEEETLKFAKKLCIRTVAVIGGLSREDQGFQLRLGCEIVIATPGRLIDVL
ENRYLVLSQCSYVVMDEADRMIDMGFEPDVQRILEFLPVTNIKPDTEDAE
NPDFIASNLSAQEKYRQTVMFTATMPPIVERLARTYLRRPATVYIGSVGR
PVERVEQRAYMLTESAKKKKLLEVLDNADDPPILVFVNQKKGADVLAKSL
EKQGYRACTLHGGKSQEQREFALASLKDGSKDILVATDVAGRGIDIKDVS
LVINYDMAKSIDSYTHRIGRTGRAGKSGVAVSFLTQADSEVFYDLKQMLI
DSALSTCPNELMNHPEAQHKPGTVLTKKRREEVIHV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012491XLOC_012491Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022274TCONS_00022274Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 134..175
NoneNo IPR availableCOILSCoilCoilcoord: 287..307
NoneNo IPR availableGENE3D3.40.50.300coord: 275..602
e-value: 1.4E-62
score: 210.8
NoneNo IPR availableGENE3D3.40.50.300coord: 603..763
e-value: 6.2E-46
score: 155.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 291..312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..231
NoneNo IPR availableCDDcd00079HELICccoord: 610..733
e-value: 5.20311E-38
score: 137.754
NoneNo IPR availableCDDcd00268DEADccoord: 360..593
e-value: 8.29255E-84
score: 266.273
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 644..725
e-value: 5.0E-35
score: 132.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 617..725
e-value: 7.3E-31
score: 106.7
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 617..765
score: 23.291
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 377..608
e-value: 2.0E-59
score: 213.4
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 389..593
score: 29.686
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 382..581
e-value: 7.3E-49
score: 165.8
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 514..522
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 358..386
score: 10.257
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 564..746
coord: 435..533

Blast
[Close]
BLAST of TCONS_00022274-protein vs. Swiss-Prot (Human)
Match: DDX23 (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3)

HSP 1 Score: 921.383 bits (2380), Expect = 0.000e+0
Identity = 476/769 (61.90%), Postives = 587/769 (76.33%), Query Frame = 0 
Query:   27 DRERDRDRDKYKEKSSRDKKRDRHRSRSRSRDRRDRRSRRSRSRSRD--KDKDTDSRNKEKSKLLENKLATEELEDGEWTANTKKEPLSLEEMIMKREEEKKALEKPKFLTKEERAAEALKKRQEQVEAQRQKLQEERDARQQ-------LMKDADKTRDGGRYGDRHRRDRDYEERDRRRDEGRTAREQEKDKEKESDAIKQRYLGGVKKKKKIRRLNDKKFVFDWDTGEDTSQDYNTLYRERHEAQFFGRGHKAGIDIKAQKKE-GKFYEKLMEDRRSESEKQQEKKNQQRLLNKEDQLALKDRHWKKKSLTEMTDRDWRIFKEDFNISAKGGKIPPPMRYWKEGKLPPDIIDVIKSNGYTDPTPIQRQAIPIGLLNRDIIGIAETGSGKTAAFVIPLLVWITGLPEADRASVGDAGPFAIILAPTRELAQQIEEETLKFAKKLCIRTVAVIGGLSREDQGFQLRLGCEIVIATPGRLIDVLENRYLVLSQCSYVVMDEADRMIDMGFEPDVQRILEFLPVTNIKPDTEDAENPDFIASNL-SAQEKYRQTVMFTATMPPIVERLARTYLRRPATVYIGSVGRPVERVEQRAYMLTESAKKKKLLEVLDNADDPPILVFVNQKKGADVLAKSLEKQGYRACTLHGGKSQEQREFALASLKDGSKDILVATDVAGRGIDIKDVSLVINYDMAKSIDSYTHRIGRTGRAGKSGVAVSFLTQADSEVFYDLKQMLIDSALSTCPNELMNHPEAQHKPGTVLTKKRREEVI 784
            D+ERDR+      K  RD+ +D HR     RD+  +RS  S  R +D    KD DS+  E              ED       K +PLSLEE++ K++ E++A  KPKFL+K ER AEALK+RQ++VE +++ L+EER  R+Q       +++D  +     R     R     E+     +EGR    +EKDK KE  AIK+RYLGG+KK+++ R LND+KFVF+WD  EDTS DYN LY+ERH+ Q  GRG  AGID+K QK+E  +FY  LME RR+  EK+QE+   ++L  KE +    DRHW +K L EMTDRDWRIF+ED++I+ KGGKIP P+R WK+  LPP I++VI   GY +PTPIQRQAIPIGL NRDIIG+AETGSGKTAAF+IPLLVWIT LP+ DR    D GP+AIILAPTRELAQQIEEET+KF K L IRTVAVIGG+SREDQGF+LR+GCEIVIATPGRLIDVLENRYLVLS+C+YVV+DEADRMIDMGFEPDVQ+ILE +PV+N KPDT++AE+P+ + +N  S + KYRQTVMFTATMPP VERLAR+YLRRPA VYIGS G+P ERVEQ+ ++++ES K+KKLL +L+   DPPI++FVNQKKG DVLAKSLEK GY ACTLHGGK QEQREFAL++LK G+KDILVATDVAGRGIDI+DVS+V+NYDMAK+I+ Y HRIGRTGRAGKSGVA++FLT+ DS VFY+LKQ +++S +S+CP EL NHP+AQHKPGT+LTKKRREE I
Sbjct:   80 DKERDRN------KKDRDRDKDGHR-----RDKDRKRSSLSPGRGKDFKSRKDRDSKKDE--------------EDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNED-----EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKKRREETI 818
The following BLAST results are available for this feature:
BLAST of TCONS_00022274-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX230.000e+061.90Probable ATP-dependent RNA helicase DDX23 OS=Homo ... [more]
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