|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00022166-protein ID=TCONS_00022166-protein|Name=TCONS_00022166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1462bp
MMSSKGKNVPDPKVGKNSTQSRKKNPRRSQRHLSNGDPVDDSKERASKRG
RDSNKDFDGNYEAEFPQELYKSVIDLVPSTEYNCEPTEKPAPPGTQVNLH
GVILHETQDGLLVLNVRWRNQVFSGALIDVEKTKWASERVSAEGNSELSK
FTSTQPPIKKLRIPTSALRQQHDDSDSSGSTKKKAGTTSPTTSGKSKSRT
GTSKKRGVTASVEPVSPPPDDPQTTPKKSKVKPLTNGDAATATFECPETN
CRKRYKNKNGLAYHMEKTHPPTPKKAESYEEKDIKSDDSDSGDDNFVIDE
KAGDDDDEEEENPTEDESKSNVVSQPSSDDVKMDDIKPDNNSESKNGPKT
ESPSTSETVPMEIDNSTTPKKENEGVKMEKEAKPSVKSEETKNVDIPTPV
KDEKPVMPITVVPSVSTLVQSGHSITIIKSSDKNDTKHLLDSKDPKSKMM
PTPGGASNIQVMRAAPTTNLNYGQALAQQAPPPSIVVVKSEEERQRQGST
KIIHHADPAEQLNELFNGRPVAQPQGHPPFNTALGGSINPQKFPDGMNTG
LSKQQQLILVHQQQQQKQQQLQNKQLPQQNIPLTQQSSASHPTLTTALST
NFLPATSMVNLPLPKPTLSSKPSLEIKPNTYNLLNNPTTKVMGYGEEFFN
KPLAGTGSVESRQPLKQEERVDDSDDEGAATTDLVLSAVHRVYPQKEKDL
QSTAEPAVLDARPFKVNTVLTTLASVATVPTATFGAGTLSGLIGARPQQG
FENALLFKDFASKVANEGANLGANLNFYQGKYPLVISDHQKTVSPQILRP
ITDSNGQSLTILPSIIGSSNSELKSNVLNINSSAPSGASSIPSGAGGAAE
SAKTSLLHQRLMLNEDTSAAASNKNFIPPSNVKPNNGAHPSQYGLPTQKQ
DMSSAASEYRLSNDKVSVTTSMTLTRMPEKMKVGLPGQGGLRINPPPDER
GPPSRSQHPDNLKEAMLQPKELSGSSQYRQLPITKSLARGEMPNALFAAA
AGVPPSSLGAVASSPSVAGGIDNRRKMLMNRTTSTIPIAPAPPSTTSMSR
ATDPSVIGSGEYAGPEGNRENYMHRFTLTSDKRLVSSPAENRGRPKKIRV
EKTETIPIGTAQEMARSRGAMESPSARSRASESPIGRKVTSPVVRASVIQ
GQLHPVVGQTSIADHTSPPKNDHHLFQLSRGGGEHGGPVMDERARFGQPA
KMSTMDARAIPGSITEKNIKSPPGMGSYYNQPPNQRQRILSPPTSRSPAI
SPRVSNESIPRSPSPGIFSHEHGKPYHPYPVENREKYGFGHPGGPPGEHA
RISEQIRKQELHRSVSDQGRVIADPRKSVLSPREGISINPPFNRQLHEDY
ANFTRHQSPRAEMAPRDIPPRPSSMYEHRSLEDSAEQARILASTRDRFMM
APGLSSQQPLYNVGRSGTPPSSGAPTPSSHHSSNLVLGRADGSILSKNLN
YEPSARPGEQKR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 244..269
e-value: 0.0041
score: 26.3 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 246..269 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 244..269
score: 9.224 |
| None | No IPR available | GENE3D | 2.160.10.10 | | coord: 146..398
e-value: 7.7E-5
score: 21.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1354..1386 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1212..1300 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 871..911 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1111..1139 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 139..401 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1160..1190 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1399..1462 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 654..679 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 931..960 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..60 |
Blast
BLAST of TCONS_00022166-protein vs. Swiss-Prot (Human)
Match: ZN609 (Zinc finger protein 609 OS=Homo sapiens GN=ZNF609 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 4.830e-17 Identity = 64/241 (26.56%), Postives = 103/241 (42.74%), Query Frame = 0
Query: 73 VIDLVPSTEYNCEPTEKPAPPGTQVNLHGVILHETQDGLLVLNVRWRNQVFSGALIDVEKTKWASERVSAEGNSELSKFTSTQPPIKKLR----IPTSALRQQHDDSDSSGSTKKKAGTTSPTTSGKSKSRTGTSKKRGVTASVEPVSPPPDDPQTTPKKSKVKPLTNGDAATAT----------------------------------------FECPETNCRKRYKNKNGLAYHMEKTH 269
D+ +TE C P PGT VNL G++ ET+DG+LV+NV WRN+ + G L+D + WA R S+L + + + K++R P + D +S S+K +AG S G+ S+ + + +++ E V P ++ K K KPL++ + +++ +CP NC K+YK+ NGL YH H
Sbjct: 291 TCDVALATEPECL---GPCEPGTSVNLEGIVWQETEDGMLVVNVTWRNKTYVGTLLDCTRHDWAPPRFCDSPTSDL-EMRNGRGRGKRMRPNSNTPVNETATASDSKGTSNSSKTRAGANS---KGRRGSQNSSEHRPPASSTSEDVKASP----SSANKRKNKPLSDMELNSSSEDSKGSKRVRTNSMGSATGPLPGTKVEPTVLDRNCPSPVLIDCPHPNCNKKYKHINGLKYHQAHAH 520
The following BLAST results are available for this feature:
|
