TCONS_00022083-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022083-protein
Unique NameTCONS_00022083-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022083-protein ID=TCONS_00022083-protein|Name=TCONS_00022083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MSREFNKNRVFVGRLNPEARTRDVEKFFRDKGFSKVKNVDVKLGYAFVEF
EDKRDADDAVYELDRKEFFGSRLTVEHATGTPREGGGGGGGFRDRGRRFD
RGGGGGGGRSRPYNTEWRIIVKNLSSRVGWSELKDYFRGAGEVTFTKANK
ERMGEGVVEFRTYKEMQRAMKKFDGVEFYDRRLTLIDDSPGPPRDHSRSR
SRSRSRSRKRSRSRTRSPDRRRRRSRSPAKSVSRSRSRSRSRSRSPKRSR
TRSRSRSKSRSRSKTPASERRSRSRSKSRSPPPAED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012382XLOC_012382Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022083TCONS_00022083Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 118..186
e-value: 1.6E-12
score: 57.6
coord: 9..76
e-value: 1.9E-15
score: 67.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 119..183
e-value: 2.5E-10
score: 39.9
coord: 10..73
e-value: 5.2E-13
score: 48.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 117..190
score: 11.128
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 8..80
score: 15.067
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 8..185
NoneNo IPR availableGENE3D3.30.70.330coord: 2..113
e-value: 1.3E-17
score: 63.5
NoneNo IPR availableGENE3D3.30.70.330coord: 114..185
e-value: 1.1E-14
score: 53.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..286

Blast
[Close]
BLAST of TCONS_00022083-protein vs. Swiss-Prot (Human)
Match: SRSF4 (Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.230e-54
Identity = 96/186 (51.61%), Postives = 127/186 (68.28%), Query Frame = 0 
Query:    9 RVFVGRLNPEARTRDVEKFFRDKGFSKVKNVDVKLGYAFVEFEDKRDADDAVYELDRKEFFGSRLTVEHATGTPREGGGGGG----GFRDRGRRFDRGGGGGGGRSRPYNTEWRIIVKNLSSRVGWSELKDYFRGAGEVTFTKANKERMGEGVVEFRTYKEMQRAMKKFDGVEFYDRRLTLIDDSP 190
            RV++GRL+ +AR RDVE+FF  KG+ K+  VD+K GY FVEF+D RDADDAVYEL+ K+  G R+ VEHA G  R+G  G G    G+R  GR  D+ G        P  TE+R+IV+NLSSR  W +LKDY R AGEVT+  A+K R  EGV+EF +Y +M+RA++K DG E   R++ L++D P
Sbjct:    3 RVYIGRLSYQARERDVERFF--KGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGR--DKYGP-------PTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKP 177
The following BLAST results are available for this feature:
BLAST of TCONS_00022083-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF41.230e-5451.61Serine/arginine-rich splicing factor 4 OS=Homo sap... [more]
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