TCONS_00022023-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022023-protein
Unique NameTCONS_00022023-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length988

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022023-protein ID=TCONS_00022023-protein|Name=TCONS_00022023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=988bp
MGVPAFFRWLSKKYPSIVTHCVEEKKRGIDGEAVPLDTSLPNPNEYEFDN
LYLDMNGIIHPCSHPENKPAPKNEAEMMVNIFEYIDRIFSICRPRKLLYM
AIDGVAPRAKMNQQRSRRFRAAKDSRESKQIIHDIKQKLLEKGCLLPAEP
EKKESFDSNCITPGTDFMDRLSVCLRFYIADRLSHDPGWKNVKVILSDAN
VPGEGEHKIMDYIRKQRAQPDHDPNTKHCLNGADADLIMLGLATHELHFT
IIREEFKPGQKKPCEICAQAGHDKSDCEGLPKEKVSENDEIQPFVAPEVE
FIFIRLFVLREYLERELRMDGLSFYNFERALDDWVFMCFFVGNDFLPHLP
SLEIREGAIDRLVNIYKKALPLMGGYLADSGFVEMSRVQIILKELGGVED
EIFRRRQQNEENFQRRRKQQEERNKRQRREGSDGPGWSPSNYASPLGRGQ
SPSSSFHNSPSHKQXPLGRGQSPSSSFHNSPSHKQFYQGQRTPEPNRNKM
AANDLRNMLLTPNPDGAVDSPKPGEKRKHEQVEEKKKEPEAPQDHIRLYE
EGWRSRYYLHKFNVDQDDDPEYFKRFTKHVADEYVLGLCWVLRYYYQGCP
SWKWFYPFHYAPFASDFVDIVDVDTNFEKGTGPFRPLEQLMSVFPAASGK
FLPPTWRALMSSPDSEIIDCYPCDFKIDLNGKKMAWQGVALLPFVDEKRL
HRALSQVYGDLTEDETRRNTNRQDNVMFVGKGNGLFDFITGLNESNMLKE
GKQDIVTDFSNGQRGKIFYDDKVVMPGSFYPCPVPGQEDIASVQSISVRY
EDPEYDEDFKFLAKPLEKCTPPERVVKPGDFPQDKVWRPKLGMGNRNFNP
NHVSPGGQRMLRHELGMNNRGSPRGGYSPQNNRFRSPGGPGSSPHGGSRW
GPPNSYNSPPPQYGYGTPPRGGGGGGYHRNNHQQGGGSWGGNSWRGGGGG
GHHRSQSHHERSFDGGHHQNDPNRRRSYSDRRSEQRRY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012369XLOC_012369Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022023TCONS_00022023Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017151Xrn2/3/4
IPR004859Put_53exo
Vocabulary: Molecular Function
TermDefinition
GO:00045345'-3' exoribonuclease activity
GO:0003676nucleic acid binding
GO:0004527exonuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0004534 5'-3' exoribonuclease activity
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 404..430
IPR0171515'-3' exoribonuclease type 2PIRSFPIRSF037239Exonuclease_Xrn2coord: 1..988
e-value: 0.0
score: 1121.8
IPR004859Putative 5-3 exonucleasePFAMPF03159XRN_Ncoord: 1..255
e-value: 1.9E-102
score: 341.7

Blast
[Close]
BLAST of TCONS_00022023-protein vs. Swiss-Prot (Human)
Match: XRN2 (5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1)

HSP 1 Score: 929.858 bits (2402), Expect = 0.000e+0
Identity = 505/940 (53.72%), Postives = 635/940 (67.55%), Query Frame = 0 
Query:    1 MGVPAFFRWLSKKYPSIVTHCVEEKKRGIDGEAVPLDTSLPNPNEYEFDNLYLDMNGIIHPCSHPENKPAPKNEAEMMVNIFEYIDRIFSICRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDSRESKQIIHDIKQKLLEKGCLLPAEPEKKESFDSNCITPGTDFMDRLSVCLRFYIADRLSHDPGWKNVKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTKHCLNGADADLIMLGLATHELHFTIIREEFKPGQKKPCEICAQAGHDKSDCEGLPKEKVSENDEIQ-PFVAPEVEFIFIRLFVLREYLERELRMDGLSF-YNFERALDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKKALPLMGGYLADSGFVEMSRVQIILKELGGVEDEIFRRRQQNEENFQRRRKQQEERNKRQRREGSDGPGWSPSNYASP--LGRGQSPSSSFHNSPSHKQXPLGRGQSPSSSFHNSPSHKQFYQGQRTPEPNRNKMAANDLRNMLLTPNPDGAVDSPKPGEKRKHEQVEEKKKEPEAPQDHIRLYEEGWRSRYYLHKFNVDQDDDPEYFKRFTKHVADEYVLGLCWVLRYYYQGCPSWKWFYPFHYAPFASDFVDIVDVDTNFEKGTGPFRPLEQLMSVFPAASGKFLPPTWRALMSSPDSEIIDCYPCDFKIDLNGKKMAWQGVALLPFVDEKRLHRALSQVYGDLTEDETRRNTNRQDNVMFVGKGNGLFDFITGLNESNMLKEGKQDIVTDFSNGQRGKIFYDDKVVMPGSFYPCPVPGQEDIASVQSISVRYEDPEYDEDFKFLAKPLEKCTPPERVVKPGDFPQD---KVWRPKLGMGNRNFNPNHVSPGGQRMLRHELGMNNRGSPRGGYSP--------QNNRFRS-PGGPGSSPHGGSRWGPPNSYNSPPPQYGYGTPPRGGGG 924
            MGVPAFFRWLS+KYPSI+ +CVEEK +  +G  +P+D S PNPN+ EFDNLYLDMNGIIHPC+HPE+KPAPKNE EMMV IFEYIDR+FSI RPR+LLYMAIDGVAPRAKMNQQRSRRFRA+K+  E+      +++++L KG  LP E E KE FDSNCITPGT+FMD L+ CLR+YIADRL++DPGWKN+ VILSDA+ PGEGEHKIMDYIR+QRAQP+HDPNT HCL GADADLIMLGLATHE +FTIIREEFKP + KPC +C Q GH+  DCEGLP+EK  ++DE+       E EFIF+RL VLREYLEREL M  L F ++ ER++DDWVFMCFFVGNDFLPHLPSLEIRE AIDRLVNIYK  +   GGYL +SG+V + RVQ+I+  +G VED IF++R+ +E++F+RR+K++ +R K       D P ++PS   +P  LG   SP S   ++P                     +++   Q   +P  + N    +D      +P+P G +       KRK    E+   EPE P+D++RL+E GW+ RYY +KF+VD  D+     +F + V   YV GLCWVLRYYYQGC SWKW+YPFHYAPFASDF  I D+ ++FEKGT PF+PLEQLM VFPAASG FLPP+WR LMS PDS IID YP DF IDLNGKK AWQGVALLPFVDE+RL  AL +VY DLT +ETRRN+   D V+FVGK + L DFI  L ++   +    ++  +  +G +GK   D++ ++P      PVP   D+     +S+ ++DP++ ED+ F A  L     P  V+KP D+ +    + W+P+LG  NR+  P H+     R L H +    RGS  G YS         Q N +R    G    P   S   P +S+  PPP +      RG G 
Sbjct:    1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPE-EIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMK------RDQPAFTPSGILTPHALGSRNSPGSQVASNPRQA------------------AYEMRMQNNSSPSISPNTSFTSDG-----SPSPLGGI-------KRK---AEDSDSEPE-PEDNVRLWEAGWKQRYYKNKFDVDAADE-----KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGD-VLFVGKHHPLHDFILELYQTGSTE--PVEVPPELCHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKPSDWEKSSNGRQWKPQLGF-NRDRRPVHLDQAAFRTLGHVMP---RGSGTGIYSNAAPPPVTYQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGA 887
The following BLAST results are available for this feature:
BLAST of TCONS_00022023-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRN20.000e+053.725'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE... [more]
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