TCONS_00021998-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021998-protein
Unique Name	TCONS_00021998-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	913

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021998-protein ID=TCONS_00021998-protein|Name=TCONS_00021998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=913bp
MSSEKRKRKSEGMNIPIETKRQFIDARRDDRSKKTKRSNEHTNKFAYSVE
PRGINVLEYAEARAHEICNLKSAIAEAKKGYNVHTLQKLPRHMRRRAGNH
DVKRLPRRLRDSAVTNIAKSNKDVKSKEKKKPNRHQRRKPKNLFEEYKRR
QDKCTWLETHIWHAKRCYMNEKWGYKIATKTFSKAVRSSYRAAKSSCLIQ
DISFNEIIEVTGKVESIRDCMKKLGNITDMESTHNCTKFIEFVAYQNDQY
PRGAIGPIKLLWISSIDEATTKCNAVIISHTAISKQVIKEIESFNKTLDA
DNQISITHHVMDFVLFKLTGTQSASVIQNVLTVNDPDNQKWWTPLFEAED
KTVLNLNVKDPRLYLPKKKQNALLLDKDIPSDQKDEIKEDLNGHATLSKI
FTEYSDIWDKQKRMFSSNSKIADHDINESKAELLYSDDNKPVVESCQIPV
CILKTPGNSTNHFAKGFEMILPSNWAMPFWIALVYQGARAGCLEEAANVS
YEASILHFPRDYIDTNVGKAVNDEKAQELHNHYNRVPPAKRISYEPLGVR
CPYFLPWQDLISQWNLNFKHLTQIDLIKREHKEFYVLRDSSILQRLKTLM
MDKTFKLPDLKELDVDRALVPIRLTSTKNGVPSNNAMLCIPSYQDFLDLQ
ESKLDELTEYNGPKEPQHKGPKHKFPFIYKNHENVAFHNXKRISYEPLGV
RCPYFSPWQDLISQWNLNFKHLTQIDLIKCEHKEFYVLRDSSILQRLKTL
MMDKTFKLPDLKELDVDRALVPIRLTSTKNGVPSNNAMLCIPSYQDFLDL
QESKLDELTEYNGPKEPQHKGPKHKFPFIYKNHENVAFHNVQDIGRSTHW
VMGYLQTGNYSFQAGKGTGVGFVSAIALYYHWKCLDGKEDRNLILFRNTN
TLQYRFCEIDIIC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012346	XLOC_012346	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021998	TCONS_00021998	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012590	POPLD
IPR009723	RNase_P/MRP_POP1

Vocabulary: **Molecular Function**
Term	Definition
GO:0004526	ribonuclease P activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0001682	tRNA 5'-leader removal

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0001682	tRNA 5'-leader removal
molecular_function	GO:0004526	ribonuclease P activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012590	POPLD	PFAM	PF08170	POPLD	coord: 467..557 e-value: 2.0E-26 score: 92.1
IPR009723	Ribonuclease P/MRP, subunit POP1	PFAM	PF06978	POP1	coord: 139..212 e-value: 2.1E-18 score: 66.9 coord: 59..137 e-value: 4.4E-16 score: 59.4

Blast

[Close]

BLAST of TCONS_00021998-protein vs. Swiss-Prot (Human)
Match: POP1 (Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens GN=POP1 PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 5.264e-64
Identity = 183/628 (29.14%), Postives = 275/628 (43.79%), Query Frame = 0

Query:   51 PRGINVLEYAEARAHEICNLKSAIAEAKKGYNVHTLQKLPRHMRRRAGNHDVKRLPRRLRDSAVTNIAKSNKDVKSKEKKKPNRHQRRKPKNLFEEYKRRQDKCTWLETHIWHAKRCYMNEKWGYKIATKTFSKAVRSSYRAAKSSCLIQDISFNEIIEVTGKVESIRDCMKKLGNITDMESTHNCTKFIE------FVAYQNDQYPRGAIGPI----------------KLLWI--------SSIDEATTKCNAV--IISHTAISKQVIKEIESFNKTLDADNQIS----------------------------------------ITHHVMDFVLFKLTGTQSASVI------QNVLTVNDPDNQ---KWW--------------------------TPLFEAEDKTVLNLNVKDPRLYLPKKKQNALLLDKDIPSDQKDEIKEDLNGHATLSKIFTE--YSDIWDKQKRMFSSNSKIADHDINESKAELLYSDDNKPV-VESCQIPVCILKTPGNSTNH----FAKGFEMILPSNWAMPFWIALVYQGARAGCLEEAANVSYEASILHFPRDYIDTNVGKAVNDEKAQELHNHYNRVPPAKRISYEPLGVRCPYFLPWQDLISQW 564
            P+ I    +A+ARA EI  +  A+ +  K  N    Q LPRHMRRRA +H+VKRLPRRL++ A     K+    K   K K ++  RR   N   E+ RRQ K  WLETHIWHAKR +M +KWGY +  +   K+ R+ YRA  + CL+QD+S+   +E+ GK E I   +  + NI D   T      +        V Y+ ++YPR  +GP+                + LWI          ++E    C  V  I S   I+  +    +  ++T   D +I                                         I+   M+   F+L G  S S++       +V TV +   +   +WW                          T   E    T+L L V DPR+ LP+KK  AL      P+ +K +  E +     L  +  E  +S IW++      + +KI+D D+N  ++ELL       +     +IP+ +++ PG  T      +  G++++LP  W M FWI  +Y+G R G L+E+A  S      + P D+ D   G    +E+A+ L   Y R PPAKR +Y  LG   P+  PW+ L   W
Sbjct:   99 PKYITASTFAQARAAEISAMLKAVTQ--KSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAVHQKKEHSKNKCHK-ARRCHMNRTLEFNRRQKKNIWLETHIWHAKRFHMVKKWGYCLGERPTVKSHRACYRAMTNRCLLQDLSYYCCLELKGKEEEILKALSGMCNI-DTGLTFAAVHCLSGKRQGSLVLYRVNKYPREMLGPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVEPIKSAVCIADPLPTPSQEKSQTELPDEKIGKKRKRKDDGENAKPIKKIIGDGTRDPCLPYSWISPTTGIIISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHCRQEAIFELLGGITSPAEIPAGTILGLTVGDPRINLPQKKSKAL------PNPEKCQDNEKVR-QLLLEGVPVECTHSFIWNQDICKSVTENKISDQDLNRMRSELLVPGSQLILGPHESKIPILLIQQPGKVTGEDRLGWGSGWDVLLPKGWGMAFWIPFIYRGVRVGGLKESAVHSQYKRSPNVPGDFPDCPAGMLFAEEQAKNLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTQDW 715

The following BLAST results are available for this feature:

BLAST of TCONS_00021998-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021998-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
POP1	5.264e-64	29.14	Ribonucleases P/MRP protein subunit POP1 OS=Homo s...	[more]

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TCONS_00021998-protein (polypeptide) - C. hemisphaerica