TCONS_00021997-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021997-protein
Unique NameTCONS_00021997-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021997-protein ID=TCONS_00021997-protein|Name=TCONS_00021997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MEVGLFSDTSGEQSCVSVYNLSTGVVLKTFKNGSCGRKGLALVQNEYLLA
VQHAKQLIHIYDMEKESLMKKIVCSEKINAIAVTPDGHFVVAALKDQIHI
WQFSSGQLYCVLSRHFQDIVGIEFTEDGKYFVSYGQDNLIIVWDLNNVLQ
SCMSSPNSMTSEQRHKPVHVLSNHSMSVEDLNIGVGSFRANMVSCSLDQT
CKIFEVSSGKLLKNFVFDVGCTSVAMDTCEKLLFVGMADGRIAIINCYDQ
KPSVDAEVTESCYMKAHKKAITCLSVSLDGQHLISGSKDCFVKIWHISSR
KCIRSFEFKEQITNVQLKPAFLFNNNYNNNTSNSCKRTIGNFQRSVYTPT
TYKDTNEMFSASSKMADNSDTIPMVLRDINDNEEGYQEPKSCLEDVLREF
YYSKQSSSSSTEDENNTASREELQQRVASLEAMTQELYKASTNKLLQTXL
PL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012345XLOC_012345Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021997TCONS_00021997Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 420..440
NoneNo IPR availableGENE3D2.120.10.60coord: 89..173
e-value: 1.6E-15
score: 57.0
NoneNo IPR availableGENE3D2.80.10.50coord: 174..203
e-value: 0.016
score: 14.3
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 65..102
e-value: 1.8
score: 15.4
coord: 164..205
e-value: 2.3
score: 14.7
coord: 208..246
e-value: 13.0
score: 10.0
coord: 257..296
e-value: 4.1E-7
score: 39.6
coord: 105..144
e-value: 9.1E-4
score: 28.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 265..295
e-value: 4.8E-6
score: 27.1
coord: 110..144
e-value: 0.19
score: 12.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 264..305
score: 14.251
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 112..147
score: 12.213
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 204..362
e-value: 5.2E-24
score: 84.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 8..88
e-value: 7.8E-10
score: 37.6
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 71..305
score: 16.876
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 11..310

Blast
[Close]
BLAST of TCONS_00021997-protein vs. Swiss-Prot (Human)
Match: WDR18 (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 9.847e-74
Identity = 121/335 (36.12%), Postives = 201/335 (60.00%), Query Frame = 0 
Query:    1 MEVGLFSDTSGEQSCVSVYNLSTGVVLKTFKNGSCGRKGLALVQNEYLLAVQHAKQLIHIYDME-KESLMKKIVCSEKINAIAVTPDGHFVVAALKDQIHIWQFSSGQLYCVLSRHFQDIVGIEFTEDGKYFVSYGQDNLIIVWDLNNVLQSCMSSPNSMTSEQRHKPVHVLSNHSMSVEDLNIGVGSFRANMVSCSLDQTCKIFEVSSGKLLKNFVFDVGCTSVAMDTCEKLLFVGMADGRIAIINCY----DQKPSVDAEVTESCYMKAHKKAITCLSVSLDGQHLISGSKDCFVKIWHISSRKCIRSFEFKEQITN--VQLKPAFLFNNNYN 328
            MEV + +D++       V+ L +G  L T++ G  G +GLAL+  EYLLA Q  K  I  ++++ K+ L +KI+C   +  +  +P+G +V+A + + IH+W+ S+G L  +LSRH+QD+  ++FT D  +F+S G+D L++VW L +VLQ   + P+ + +     P HV S+H++ + DL+ G G   A + + SLDQT K++EVSSG+LL + +FDV   +V MD  E  +F G ++G I  ++ +     ++ S   E       K H+  +TCLSVS DG  L+SGS D  V++W + S++CIR+   K  +TN  + L P  + ++++ 
Sbjct:    5 MEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQ---ADPSRIPA-----PRHVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTVALKGPVTNAAILLAPVSMLSSDFR 331
The following BLAST results are available for this feature:
BLAST of TCONS_00021997-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR189.847e-7436.12WD repeat-containing protein 18 OS=Homo sapiens GN... [more]
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