TCONS_00021928-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021928-protein
Unique Name	TCONS_00021928-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1126

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021928-protein ID=TCONS_00021928-protein|Name=TCONS_00021928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1126bp
MALNSPKENNESAINSLNLAWDPKTIEIRTRSVEKALEPLIIQVTTLVNH
SKKNQKLKRGRSKKAVQLVKDIDQATARLVDVGQDIAEDYQEVKIPMLEA
CTEAEEAGKVMHDAATEFALDPCTPSKRGTMVKSARILLSSVTRLLCIAD
MADVHRLLTTLKKVEERLKELEVMDTADDLLSAFKHYGNDLMQFAKLTGL
RQADLKDARRKDEMAAARATLKRTSKMLLTTSKAYVSHPDLQSTKQNRDY
VVDQVSSAVATISGVAQAVGESQRHPYEEVGYLARALDELMAQLEREPED
FHDKENQNDLHLLVDDIVTGASNLAESVCTREKTRQKIFNESRHVKVAIK
GLIDECDNHAHRDKSDVDGAKRKVGKKAKDLTKQLTRSVVDHVSDSFLET
NVPILLLIKAAESGNGREVEDCSNLFMGHADKLQKVADLACSMSTNVEGI
KMVKIAAHQLKLLCPQVVNAAHTLTDRPKSKHARENMSVFKEAWLQQVAI
LTEAVDDITTIDDFLTVSEAHILEDINHCIEAMQSNDPETLDRTAGAVRG
RVKRVDHVVMSEMLNYEPGQYTDSVYRAVGTMKNRIMVEFAECVEMVVDA
LSKGNVGDVDEALFIDVAGLVHEGMRDIRKAVALRDDEESEESELDEDPL
LKESLLNQLAEAQIQQRERLAYEQLIAGGKIQFEVHSEGLDDPGCKGKPH
IVVNGVDYCPHKRGHNVVVLDQCGNVVKQQAFDTTQHKEGVAMAKFLDEI
PENHIALIAVQETGGDGIKAAAEALKRFGAKDVDAPYGASWAFAGYKGDH
ENKGWVTEVARPRYQGPAMISDMINTPAADMGQIHVSIHAEGCEDNPYDR
IASVKINSIERSPMGRGMNVVVLDKSGNYLLSKNFDTADPYHAVNEGKRM
SKFLDELPEDRIVAIASLESVGDGLEEAKEALYRVGARPPIDPGQNGSFA
FIGYTSPAKVGWLKQVHKKRRQGPSKINEFILTPAAVEEVILEEEEEEQV
FEEPAYHFDENKYERIILSSEEEPVKHSASSIMRSLPDEEKAKISKLNEG
FLLEKNRLISEVSRWDDSGNEIIVLAKRMCMIMMDMSDFTRIWISIYRQQ
RNVKRWKSNSLKTMEKRLVIYQVSCP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012305	XLOC_012305	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021928	TCONS_00021928	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001033	Alpha_catenin
IPR006077	Vinculin/catenin

Vocabulary: **Molecular Function**
Term	Definition
GO:0045296	cadherin binding
GO:0051015	actin filament binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007155	cell adhesion

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007155	cell adhesion
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0045296	cadherin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 154..174
None	No IPR available	PFAM	PF15711	ILEI	coord: 713..799 e-value: 4.2E-15 score: 55.9 coord: 866..954 e-value: 5.0E-14 score: 52.4
None	No IPR available	GENE3D	1.20.120.230		coord: 1031..1115 e-value: 3.2E-9 score: 36.0
None	No IPR available	GENE3D	1.20.1420.10		coord: 277..396 e-value: 0.007 score: 15.6
None	No IPR available	GENE3D	1.20.120.230		coord: 154..273 e-value: 1.1E-20 score: 73.5
None	No IPR available	GENE3D	1.20.120.230		coord: 397..509 e-value: 4.2E-23 score: 81.2
None	No IPR available	GENE3D	1.20.120.230		coord: 511..634 e-value: 6.6E-21 score: 74.4
None	No IPR available	GENE3D	1.20.120.230		coord: 25..152 e-value: 2.4E-17 score: 62.7
IPR001033	Alpha-catenin	PRINTS	PR00805	ALPHACATENIN	coord: 612..636 score: 49.33 coord: 20..44 score: 65.78 coord: 310..334 score: 35.11 coord: 497..521 score: 77.78 coord: 136..154 score: 77.19 coord: 117..135 score: 64.33 coord: 376..396 score: 60.85
IPR006077	Vinculin/alpha-catenin	PFAM	PF01044	Vinculin	coord: 341..643 e-value: 3.4E-81 score: 273.8 coord: 1019..1091 e-value: 1.3E-18 score: 66.6 coord: 27..308 e-value: 1.6E-62 score: 212.0
IPR006077	Vinculin/alpha-catenin	SUPERFAMILY	47220	alpha-catenin/vinculin-like	coord: 511..632
IPR006077	Vinculin/alpha-catenin	SUPERFAMILY	47220	alpha-catenin/vinculin-like	coord: 65..267
IPR006077	Vinculin/alpha-catenin	SUPERFAMILY	47220	alpha-catenin/vinculin-like	coord: 1039..1091
IPR006077	Vinculin/alpha-catenin	SUPERFAMILY	47220	alpha-catenin/vinculin-like	coord: 380..509

Blast

[Close]

BLAST of TCONS_00021928-protein vs. Swiss-Prot (Human)
Match: CTNA2 (Catenin alpha-2 OS=Homo sapiens GN=CTNNA2 PE=1 SV=5)

HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 299/646 (46.28%), Postives = 436/646 (67.49%), Query Frame = 0

Query:   12 SAINSLNLAWDPKTIEIRTRSVEKALEPLIIQVTTLVNHSKKNQKLKRGRSKKAVQ-LVKDIDQATARLVDVGQDIAEDYQEVKIPMLEACTEAEEAGKVMHDAATEFALDPCTPSKRGTMVKSARILLSSVTRLLCIADMADVHRLLTTLKKVEERLKELEVMDTADDLLSAFKHYGNDLMQFAKLTGLRQADLKDARRKDEMAAARATLKRTSKMLLTTSKAYVSHPDLQSTKQNRDYVVDQVSSAVATISGVAQAVGES-QRHPYEEVGYLARALDELMAQLEREPEDFHDKENQNDLHLLVDDIVTGASNLAESVCTREKTRQKIFNESRHVKVAIKGLIDE-CDNHAHRDKSD-VDGAKRKVGKKAKDLTKQLTRSVVDHVSDSFLETNVPILLLIKAAESGNGREVEDCSNLFMGHADKLQKVADLACSMSTNVEGIKMVKIAAHQLKLLCPQVVNAAHTLTDRPKSKHARENMSVFKEAWLQQVAILTEAVDDITTIDDFLTVSEAHILEDINHCIEAMQSNDPETLDRTAGAVRGRVKRVDHVVMSEMLNYEPGQYTDSVYRAVGTMKNRIMVEFAECVEMVVDALSKGNVGDVDEALFIDVAGLVHEGMRDIRKAV-------ALRDDEESEESELD 646
            SA + + L WDPK++EIRT +VE+ LEPL+ QVTTLVN S K    K+    K    L   ++QAT   ++ G+ IA++ Q++K  ++ A  +  + G+ M  A++EFA DPC+  KRGTMV++AR LLS+VTRLL +ADMADV RLL+ LK VEE L+ ++      DL + FK +G ++++   +   RQ +LKD   +DEMAAAR  LK+ + ML T S+A++ HPD+ +T+ NRDYV  QV  A+A IS  AQA   + +   +  +G LA AL+E   ++  +P  F +   +  L   ++ I++GA+ +A+S CTR+  R++I  E   V+ A++ L+ E  +N   ++K D ++ A  K+ KK +DL +QL ++V+DH+SDSFLETNVP+L+LI+AA+SGN +EV++ + +F  HA+KL +VA+LACS+S N EG+K+V++AA Q+  LCPQV+NAA TL  RP+SK A++NM VFK+ W +QV +LTEAVDDIT++DDFL+VSE HILED+N C+ A+Q  D +TLDRTAGA+RGR  RV H++ +EM NYE G YT+ V  A   +   +M  FAE VE+ ++ALS       +E  FID + LV++G+RDIRKAV        L DD + E+ + D
Sbjct:    3 SATSPIILKWDPKSLEIRTLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISNAAQATSPTDEAKGHTGIGELAAALNEFDNKIILDPMTFSEARFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMNNTGRKEKGDPLNIAIDKMTKKTRDLRRQLRKAVMDHISDSFLETNVPLLVLIEAAKSGNEKEVKEYAQVFREHANKLVEVANLACSISNNEEGVKLVRMAATQIDSLCPQVINAALTLAARPQSKVAQDNMDVFKDQWEKQVRVLTEAVDDITSVDDFLSVSENHILEDVNKCVIALQEGDVDTLDRTAGAIRGRAARVIHIINAEMENYEAGVYTEKVLEATKLLSETVMPRFAEQVEVAIEALSANVPQPFEENEFIDASRLVYDGVRDIRKAVLMIRTPEELEDDSDFEQEDYD 648

HSP 2 Score: 91.2781 bits (225), Expect = 1.706e-18
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 0

Query:  993 EEEEEEQVFEEPAYHFDENKYERIILSSEEEPV--KHSASSIMRSLPDEEKAKISKLNEGFLLEKNRLISEVSRWDDSGNEIIVLAKRMCMIMMDMSDFTR 1091
            EE E++  FE+  Y        R  + +E++ +    SA +IM  LP EEKAKI++  E F  EK++L +EV++WDDSGN+IIVLAK+MCMIMM+M+DFTR
Sbjct:  634 EELEDDSDFEQEDYDV----RSRTSVQTEDDQLIAGQSARAIMAQLPQEEKAKIAEQVEIFHQEKSKLDAEVAKWDDSGNDIIVLAKQMCMIMMEMTDFTR 730

The following BLAST results are available for this feature:

BLAST of TCONS_00021928-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021928-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTNA2	1.706e-18	46.28	Catenin alpha-2 OS=Homo sapiens GN=CTNNA2 PE=1 SV=...	[more]

You are here

TCONS_00021928-protein (polypeptide) - C. hemisphaerica