TCONS_00021848-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021848-protein
Unique Name	TCONS_00021848-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	697

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021848-protein ID=TCONS_00021848-protein|Name=TCONS_00021848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp
AADFDGICLLMLFERLEFKCKLLANQLHEKHNIGELVEAGQPLEGLEGDQ
ASHGSLFAYHLINLQLVLSQFLRALNACDVNTFTIVSGQYPELAAHEKIL
DTYIDFLQNDRLDDTVSVEVLEKTVENFKNFYKLNLASAERDCTDFLSDS
LCFFQHGADAVAIDVQRLKGLAKACDEGSVFLNLVQMVTLKNIEIKQLCR
KIKRRMIQDSNTTLSYPVSVTQDLLDSMVEQMVLAKYVQDLASVLSLKAG
QLQDEEVLLSGHLEESSQDCITMIYEKDGDPLEILSESFQKVLMCLSGIA
IKLPEGEYDTEPEKKPTPPYLERAVTFKEELSSTTKLENKIDQKQHEVNE
VKKSLKAKSEELSEANIRISLLEKRADNATKEATTKVEQMSKRLEGLQEE
YLDKTRQSEKTMDALQHDVDELEVEKTDLKKKLEIYSKKSKLDYSALSQP
SAAMASIVAPGKPGSTMASLAKAGVAGQSMVQVVLKDSPVFLAQLDAQKK
SLQTLQKENWALKCQKMKSDLAKIPKPYMPKVLWRDGKFVPNPLLQETGK
KGESEVNSKTVMKECTNLMTNVNNLVAFPKIVDITKGKKADGKNKPSAND
QLTSHLNIMNTLIQQKDQLSKKVQKVIANELPGSSIESDLRTFYSPEYVR
MKKENESPIHIATIRLPKRNDDVKPGIRKVTITTREFSHIHEMLTVS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012255	XLOC_012255	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021848	TCONS_00021848	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022157	Dynactin

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 334..439
None	No IPR available	COILS	Coil	Coil	coord: 609..629
None	No IPR available	GENE3D	1.20.1170.10		coord: 194..642 e-value: 4.1E-9 score: 35.3
IPR022157	Dynein associated protein	PFAM	PF12455	Dynactin	coord: 3..206 e-value: 1.3E-42 score: 145.9

Blast

[Close]

BLAST of TCONS_00021848-protein vs. Swiss-Prot (Human)
Match: DCTN1 (Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3)

HSP 1 Score: 301.212 bits (770), Expect = 2.151e-88
Identity = 212/666 (31.83%), Postives = 347/666 (52.10%), Query Frame = 0

Query:    1 AADFDGICLLMLFERLEFKCKLLANQLHEKHNIGELVEAGQPLEGLEGDQASHGSLFAYHLINLQLVLSQFLRALNACDVNTFTIVSGQYPELAAHEKILDTYIDFLQNDRLDDTVSVEVLEKTVENFKNFYKLNLASAERDCTDFLSDSLCFFQHGADAVAIDVQRLKGLAKACDEGSVFLNLVQMVTLKNIEIKQLCRKIKRRMIQDSN----TTLSYPVSVTQDLLDSMVEQMVLAKYVQDLASVLSLKAGQLQDEEVLLSGHLEESSQDCITMIY-EKDGDPLEILSESFQKVLMCLSGIAIKLPEGEYDTE-PEKKPTPPYLERAVTFKEELSSTTKLENKIDQKQHEVNEVKKSLKAKSEELSEANIRISLLEKRADNATKEATTKVEQMSKRLEGLQEEYLDKTRQSEKTMDALQHDVDELEVEKTDLKKKLEIYSKKSKLDYSALSQPSAAMASIVAPGKPGSTMASLAKAGVAGQSMVQV----VLKDSPVFLAQLDAQKKSLQTLQKENWALKCQKMKSDLAKIPKPYMPKVLWRDGKFVPNPLLQETGKKGESEVNSKTVMKECTNLMTNVNNLVAFPKIVDITKGKKADGKNKPSANDQLTSHLNIMNTLIQQKDQLSKKVQKVIANELPGSSIESDLRTFYSPEYVRMKKENE 656
              D D + +L+L  RL  K +L+  Q  EK  + E       L G  G+Q S  +   Y L  LQ  L ++  AL+ C V+ +  V   YPE++AHE+ LD  I+ L  D+LD+TV+VE L K ++ +++ Y ++LA    DCT  L+D + F Q   D ++++V RL+   +   E +    L++ +     +I+Q C+KI+RRM           L++   V+  LLD       +   +Q++A+  +     L + E LL   LEE +      IY      P E L +S   ++  ++ +A  + EGEYD E P  KP PP   RA   + E++    L  K++ ++  + E+KKSLK K EELSEAN+R+SLLEK+ D+A K+A  ++E++  RLE  Q     K ++ E+TMDALQ D+D+LE EK +LK++L   SK++         P + +A++V+    G       +  + GQ+   V    ++KDSP+ L Q+ A +  +  LQ EN  LK  +MK+ LA +P  ++ K L  +G   P            SE+ +  + ++ + L+  +N L     +VDIT+   A     PSA  QL   +  + +L    ++L  +V K   ++ PG+++ +D  TF S  ++R K+E +
Sbjct:  600 GGDHDCVLVLLLMPRLICKAELIRKQAQEKFELSENCSERPGLRGAAGEQLSFAAGLVYSLSLLQATLHRYEHALSQCSVDVYKKVGSLYPEMSAHERSLDFLIELLHKDQLDETVNVEPLTKAIKYYQHLYSIHLAEQPEDCTMQLADHIKFTQSALDCMSVEVGRLRAFLQGGQEATDIALLLRDLETSCSDIRQFCKKIRRRMPGTDAPGIPAALAFGPQVSDTLLDCRKHLTWVVAVLQEVAAAAAQLIAPLAENEGLLVAALEELAFKASEQIYGTPSSSPYECLRQSCNILISTMNKLATAMQEGEYDAERPPSKP-PPVELRAAALRAEITDAEGLGLKLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADIDQLEAEKAELKQRLNSQSKRTIEGLRG--PPPSGIATLVS----GIAGEEQQRGAIPGQAPGSVPGPGLVKDSPLLLQQISAMRLHISQLQHENSILKGAQMKASLASLPPLHVAK-LSHEG---PG-----------SELPAGALYRKTSQLLETLNQLSTHTHVVDITRTSPA--AKSPSA--QLMEQVAQLKSLSDTVEKLKDEVLKETVSQRPGATVPTDFATFPSSAFLRAKEEQQ 1239

The following BLAST results are available for this feature:

BLAST of TCONS_00021848-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021848-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCTN1	2.151e-88	31.83	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 S...	[more]

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TCONS_00021848-protein (polypeptide) - C. hemisphaerica