TCONS_00021647-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021647-protein
Unique NameTCONS_00021647-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021647-protein ID=TCONS_00021647-protein|Name=TCONS_00021647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MSTVIHKRLKDALEVGHVLEKDQRSQQYMRRSLEINHHKDYHVGDENGVF
SIALNHDGRHAAIGLGSGSFALYNSQNEEWKKIRRVRTDPTVSLPLLAMK
FYPCKAHNAIYTGGSDGTIKVFNLDTFSHGERTVTEKNNQITSLDFSNDG
LYFATGGKDCSLRVYHTDNLNLSRLYSGADELDLEGSGHDLSIASGHSKK
IFVIKFHPEDRNVFLSASWDRTVKIWDLRTEYAVRTINGPYVCGDGVDLF
QGKIVSASWKAQDALQLWDYGSGKLISTLSWPTTNRRGEYLYCARFWDNS
HVVAGGSGTNDLKMINITSNEVAGEISGDGHPVQAVEVLEQKNMLICGTS
VNTLKTAIITDDDAEADVLLY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012139XLOC_012139Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021647TCONS_00021647Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 34..74
e-value: 8.9
score: 11.0
coord: 127..166
e-value: 9.1E-4
score: 28.5
coord: 82..123
e-value: 2.9
score: 14.1
coord: 187..227
e-value: 5.1E-7
score: 39.3
coord: 272..316
e-value: 70.0
score: 5.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 195..227
e-value: 2.2E-4
score: 21.9
coord: 139..165
e-value: 1.6E-4
score: 22.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 194..236
score: 14.953
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 134..175
score: 9.105
NoneNo IPR availableGENE3D1.10.10.670coord: 120..189
e-value: 1.1E-12
score: 47.2
NoneNo IPR availableGENE3D2.80.10.50coord: 190..247
e-value: 4.2E-10
score: 39.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 251..356
e-value: 1.3E-8
score: 33.4
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 20..119
e-value: 2.8E-9
score: 36.0
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 110..278
score: 17.508
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 41..355

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021647-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top