TCONS_00021639-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021639-protein
Unique NameTCONS_00021639-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021639-protein ID=TCONS_00021639-protein|Name=TCONS_00021639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MGSIPINIITTGGQTFAVASNISGGLPNQVSQIRPIAPNAATVVSQLGGA
PQIRAAFDGRKISQVKGVPNVGAITAAATVVGQPAKSTQGNLTLPIQSIT
ATTSNTPSSNTSTPQQSSSATAQPQHSSQALTKRKLQDLLHEIDPTETMD
DDVEEALLHIADDFIENVITASCQLAKHRRSNILDVKDVQLHLDRNWNMW
IPGFGSEDLRPYKKAPATEAHKQRLALIKKAMKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012132XLOC_012132Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021639TCONS_00021639Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003228TFIID_TAF12
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005669transcription factor TFIID complex
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.10coord: 129..200
e-value: 9.4E-32
score: 108.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..131
IPR003228Transcription initiation factor TFIID, subunit 12PFAMPF03847TFIID_20kDacoord: 132..199
e-value: 6.7E-31
score: 106.5
IPR003228Transcription initiation factor TFIID, subunit 12PRODOMPD012998coord: 131..211
e-value: 5.0E-33
score: 352.0
IPR003228Transcription initiation factor TFIID, subunit 12CDDcd07981TAF12coord: 130..201
e-value: 4.65347E-37
score: 125.403
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 129..201

Blast
[Close]
BLAST of TCONS_00021639-protein vs. Swiss-Prot (Human)
Match: TAF12 (Transcription initiation factor TFIID subunit 12 OS=Homo sapiens GN=TAF12 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.983e-57
Identity = 77/109 (70.64%), Postives = 96/109 (88.07%), Query Frame = 0 
Query:  126 HSSQALTKRKLQDLLHEIDPTETMDDDVEEALLHIADDFIENVITASCQLAKHRRSNILDVKDVQLHLDRNWNMWIPGFGSEDLRPYKKAPATEAHKQRLALIKKAMKK 234
             ++Q LTK+KLQDL+ E+DP E +D+DVEE LL IADDFIE+V+TA+CQLA+HR+S+ L+VKDVQLHL+R WNMWIPGFGSE++RPYKKA  TEAHKQR+ALI+K  KK
Sbjct:   53 ENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
The following BLAST results are available for this feature:
BLAST of TCONS_00021639-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF121.983e-5770.64Transcription initiation factor TFIID subunit 12 O... [more]
back to top