TCONS_00021635-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021635-protein
Unique Name	TCONS_00021635-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	829

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021635-protein ID=TCONS_00021635-protein|Name=TCONS_00021635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=829bp
MLGGFRRSNKRGNVRKRIETKDSDEENEEGEMETDSPVATPKPVAALVET
KSSKIKKSSSALSFGGEEDETDTFVVKKSKASLNMNVKVRKEKKKKKKKG
KKDLTEDEDEIMEDVSEIKAKVKPPPLAVSGGSFQIKTFSDDEEVDDATH
RFSARGGFGRPGDIPDAATIYAMKKQREQARQFGGGQNYIPMNSNKHAGR
FPSENSRLVREEMEMNSSDEERMEMKGKQTYDPYLERRSQVAKALEEAGE
MEEEEQENNQDEEELRNWENEQINKGTKIPANAYKRPALPNPVPMVHHEP
PTIYSIPNSDQSGIVSVDYITKKLAEELSTKKQLHRMHSQDFEKIKGSLA
SSKENIENLEEKAEQLDEKFSFFQDMRGFSKDLIECLGEKVKTIKSLEEA
IHQSMKKRNELIANRRQNDVKDEAQEIQGKTTADSDRVTNLRNRRIAERE
ARRTRRREYRQRSIGGSDGHFGGQSSDDELIPSDSSKFKADKEKVIKERE
LVFEDVNSSFSSVKEILSRFEQWKFGFNESYKDAFMGLCIPKLMAPFVKM
DTLTWNPLETKNNVDFEDMSWYKDAAMYGHHGDSIDTEDDDLNLLPLIVE
KILVPKLIVLTQDVWDPLSKQQTRLLVYLVKRLVDDYPTMTKESKGVQRL
METIVLKLKTSVETDLFIPLYPRSSLQGKNPKALIFLERQFWKGVKLFDN
VMQWNLILSQKKLQELGVDAILNRYLIMALQQFPDPLSSFEKCKHVVNLL
PKDWFDKNSDNVIGGLQAVARYLVGLASTAHANSLGYDENYRKRISTVIK
KIISLLMHIQAFDEARAVATDHKEKKEEA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012130	XLOC_012130	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021635	TCONS_00021635	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028211	Ntr2
IPR022783	GCFC_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0071008	U2-type post-mRNA release spliceosomal complex
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0000390	spliceosomal complex disassembly
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0000390	spliceosomal complex disassembly
cellular_component	GO:0005634	nucleus
cellular_component	GO:0071008	U2-type post-mRNA release spliceosomal complex
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 812..829
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	COILS	Coil	Coil	coord: 241..271
None	No IPR available	COILS	Coil	Coil	coord: 394..414
None	No IPR available	COILS	Coil	Coil	coord: 342..376
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 413..484
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..71
IPR028211	Pre-mRNA-splicing factor Ntr2	PFAM	PF15458	NTR2	coord: 163..358 e-value: 9.0E-13 score: 48.3
IPR022783	GC-rich sequence DNA-binding factor domain	PFAM	PF07842	GCFC	coord: 514..725 e-value: 3.3E-22 score: 79.3

Blast

[Close]

BLAST of TCONS_00021635-protein vs. Swiss-Prot (Human)
Match: PAXB1 (PAX3- and PAX7-binding protein 1 OS=Homo sapiens GN=PAXBP1 PE=1 SV=2)

HSP 1 Score: 414.461 bits (1064), Expect = 2.117e-131
Identity = 254/714 (35.57%), Postives = 386/714 (54.06%), Query Frame = 0

Query:  160 RPGDIPDAATIYAMKKQREQARQFGGGQNYIPMNSNKHAGRFPSENSRLVREEMEMNSSDEERMEMKGKQTYDPYLERRSQVAKALEEAG--EMEEEEQENNQDEEELRNWENEQINKGTKIPANAYKRPALPNPVPMVHHEPPTIYSIPNSDQSGI--------------------------------VSVDYITKKLAEELSTKKQLHRMHSQDFEKIKGSLASSKENIENLEEKAEQLDEKFSFFQDMRGFSKDLIECLGEKVKTIKSLEEAIHQSMKKRNELIANRRQNDVKDEAQEIQGKTTADSDRVTNL----RNRRIAEREARRTRRREYRQRS--------IGGSDGHFGGQSSDDELIPSDSSKFKADKEKVIKERELVFEDVNSSFSSVKEILSRFEQWKFGFNESYKDAFMGLCIPKLMAPFVKMDTLTWNPLETKNNVDFEDMSWYKDAAMYGHHGDSIDTEDDDLNLLPLIVEKILVPKLIVLTQDVWDPLSKQQTRLLVYLVKRLVDDYPTMTK-ESKGVQRLMETIVLKLKTSVETDLFIPLYPRSSLQGKNPKALIFLERQFWKGVKLFDNVMQWNLILSQKKLQELGVDAILNRYLIMALQQFPDPLSSFEKCKHVVNLLPKDWF-DKNSDNVIGGLQAVARYLVGLASTAHANSLGYDENYRKRISTVIKKIISLLMHIQAFDEARAVATDHKEK 825
            RPG+IPDAA I+A +K+R+ AR+ G   ++ P ++    GR       LVRE+    S DE+  E   K+     ++ +SQ  K  EE G    +++     + +EEL  WE EQI KG  IP     +PA    V M +    T  ++P     GI                                V++D + K+L + L + K+LH+ + Q  EK   S   S   IE LE  +  + E++ F Q+MRG+ +DL+EC  EKV  I  LE AIHQ  K+R   +  RRQ+D+KDE+ E    +   +    NL    R+R + +  A+R       +R+         G    H  G SSDDE   +D + F  +K+++ KE   VFEDV  SF S+  I S+FE W+  +  SYKDA++GLC+PKL  P +++  LTW PLE K   DFE+M W++    YG      + +D D+ LLP IVEK+++PKL V+ +++WDP S  QT  +V +  +L++ YP++   E+K  Q  ++ ++L+++ +++ D+F+PLYP++ L+ KN    +F +RQFW  VKL  N +QW  I S K LQEL +D +LNRY++MA Q       S +K ++V+N  PK WF +   +  I  L+   RYLV LA T + NS+G  +  ++     IK+I+ LL  ++A D A +VA+DH  K
Sbjct:  215 RPGEIPDAAFIHAARKKRQMARELG---DFTPHDNEPGKGR-------LVREDENDASDDEDDDE---KRRIVFSVKEKSQRQKIAEEIGIEGSDDDALVTGEQDEELSRWEQEQIRKGINIPQVQASQPA---EVNMYYQN--TYQTMPYGSSYGIPYSYTAYGSSDAKSQKTDNTVPFKTPSNEMTPVTIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNK-ALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGKMADHLEGLSSDDEETSTDITNFNLEKDRISKESGKVFEDVLESFYSIDCIKSQFEAWRSKYYTSYKDAYIGLCLPKLFNPLIRLQLLTWTPLEAKCR-DFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIKKAQNVINCFPKQWFMNLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAMSVASDHNVK 908

The following BLAST results are available for this feature:

BLAST of TCONS_00021635-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021635-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PAXB1	2.117e-131	35.57	PAX3- and PAX7-binding protein 1 OS=Homo sapiens G...	[more]

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TCONS_00021635-protein (polypeptide) - C. hemisphaerica