TCONS_00021584-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021584-protein
Unique NameTCONS_00021584-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length996

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021584-protein ID=TCONS_00021584-protein|Name=TCONS_00021584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=996bp
MADADTDQVFLDSDHNEKVTPNQDTESGAKQVESNTELNGVNQETIDVNL
KSTTKPDSNPTKIKQEDHSNTSTCKYDEDDKLIQSESGTLLSRGGEFEAE
PNQPDSVLNDIQTNSDIRFFICGSCKYNPILIGSVPKLLPCLHSFCEQCL
QKRYEIQKLNSNDPSSVAPRLKCPSCGQEFLVSGNDKPTSAFLNNQFVIE
STPNKVKGVKGIKEDHPCTSCDDDSSASSYCMNCNEWLCDACVSAHQRVK
VTKDHIIQSKSCADESGNAESPHGESAETKHKPLFCKIHPQEQLKLFCAN
CEKLTCRDCQLIEHKDHRYQFIDEAATRHREILKKLLQYLQINLGLLKDT
ISDVEKVSDGLSIQEKELEREINNAFNTLIVSIKARQDALLKELNTIVSN
KKVLLNKQKKDLTQMKVILEHNHDFAEFAVKGGSNVALLYSRKVLGTRLH
NLNSLKYRQRPLAALDLKFNLDVEKLQNYFSKVGSIFSHEEVQRKNDSYA
NTKNTTNLQSTMNRQLAQNINRNLQSGVKTAESLNFLKRQMEASATNQPP
TKYINLAASKQGLAGHQMVRTAAMNNSPSNQQRYSSPSSSAQDMIVLTSP
HSSRSSYYSMQDGKVRQHVSKYGSYQSSRDHQNHIRDRTDRNPNYGRESK
HISPKTPSDNNRNFQFYGGARGNSSLSSPIEHQNVHWPKISNEQSLKDKV
NIDDVLQKGNEQTKQLMRKLIENSTLTTSRSSSTKSNGSDGSSHPPSTEG
NVVVKQEQVSDDSQSYTAINGKHRSQPLTHHRSEGKSERSESGFDEGQNE
DYCGVCRNGGELLCCDTCPKVYHLHCHIPSLHALPSDSWSCYLCKDIGKE
NSSNLGTKRKHIEGMTDWENKLCRKILLNLFVHSDSLPFHHKVSKAQAPD
YYKVITRPMDLNTILTKLSPNHFENFQMLASFISDIRLVFSNCFVYNSAE
SEVCKMGRRLEGFFDQLLRKYVPHELHYPDESGKLKQIRREDTGVF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012106XLOC_012106Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021584TCONS_00021584Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR003649Bbox_C
IPR000315Znf_B-box
IPR001965Znf_PHD
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR017907Znf_RING_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 935..954
score: 40.22
coord: 884..897
score: 27.8
coord: 898..914
score: 56.91
IPR001487BromodomainSMARTSM00297bromo_6coord: 862..973
e-value: 1.7E-23
score: 94.0
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 873..956
e-value: 1.1E-18
score: 67.0
IPR001487BromodomainGENE3D1.20.920.10coord: 861..991
e-value: 1.4E-31
score: 108.4
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 881..954
score: 18.336
IPR001487BromodomainSUPERFAMILY47370Bromodomaincoord: 856..975
IPR003649B-box, C-terminalSMARTSM00502RAD_5coord: 329..455
e-value: 3.6E-10
score: 49.8
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 213..260
e-value: 2.2E-4
score: 30.6
coord: 281..322
e-value: 3.9E-8
score: 43.0
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 283..320
e-value: 2.9E-8
score: 33.6
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 213..260
score: 9.399
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 281..322
score: 11.419
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 802..845
e-value: 8.9E-9
score: 45.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 122..176
e-value: 6.9E-5
score: 32.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 122..176
score: 9.376
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 137..180
e-value: 0.00852847
score: 34.3436
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 265..332
e-value: 0.018
score: 14.4
coord: 91..264
e-value: 2.7E-11
score: 43.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 797..860
e-value: 2.2E-15
score: 55.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 721..796
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 599..680
NoneNo IPR availableCDDcd15541PHD_TIF1_likecoord: 802..844
e-value: 2.64357E-21
score: 88.1701
NoneNo IPR availableCDDcd00021BBOXcoord: 286..322
e-value: 6.94498E-9
score: 52.2895
NoneNo IPR availableSUPERFAMILY57845B-box zinc-binding domaincoord: 279..341
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 111..184
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 803..844
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 141..150
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 800..847
score: 9.348
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 797..845

Blast
[Close]
BLAST of TCONS_00021584-protein vs. Swiss-Prot (Human)
Match: TIF1A (Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 2.944e-58
Identity = 128/387 (33.07%), Postives = 209/387 (54.01%), Query Frame = 0 
Query:  122 CGSCKYNPILIGSVPKLLPCLHSFCEQCLQ--KRYEI-------------------QKLNSNDP-SSVAPRLKCPSCGQEFLVSGNDKPTSAFLNNQFVIESTPNKVKGVKGIKEDHPCTSCDDDSSASSYCMNCNEWLCDACVSAHQRVKVTKDHIIQSKSCADESGNAESPHGESAETKHKPLFCKIHPQEQLKLFCANCEKLTCRDCQLIEHKDHRYQFIDEAATRHREILKKLLQYLQINLGLLKDTISDVEKVSDGLSIQEKELEREINNAFNTLIVSIKARQDALLKELNTIVSNKKVLLNKQKKDLTQMKVILEHNHDFAEFAVKGGSNVALLYSRKVLGTRLHNLNSLKYRQRPLAALDLKFNLDVEKLQNYFSKVGSI 486
            C  C  N  +    PKLLPCLHSFC++CL   +RY +                     ++ + P ++    ++CP C QE             ++N FV ++T  +V      K +  CTSC+D++ A+ +C+ C EWLC  C+ AHQRVK TKDH ++ K    E  + E+       T  +P+FC  H +EQLKL+C  C+KLTCRDCQL+EHK+HRYQFI+EA    + I+  L+  L      +K T + ++     ++  +K++E++I  A  TL+V I  +  ALL +L ++  + ++ L +Q++++  +   LEH   F+++AV  GS+ ALLYS++++  RL +L   +    P+    ++F+ D          +GS+
Sbjct:   56 CAVCHQN--IQSRAPKLLPCLHSFCQRCLPAPQRYLMLPAPMLGSAETPPPVPAPGSPVSGSSPFATQVGVIRCPVCSQECA-------ERHIIDNFFVKDTT--EVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFTKDHTVRQK----EEVSPEA----VGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRYQFIEEAFQNQKVIIDTLITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDIKVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSSGSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINLGSL 423

HSP 2 Score: 162.925 bits (411), Expect = 8.895e-41
Identity = 80/201 (39.80%), Postives = 120/201 (59.70%), Query Frame = 0 
Query:  791 ESGFDEGQNEDYCGVCRNGGELLCCDTCPKVYHLHCHIPSLHALPSDSWSCYLCKDIGKE------NSSNLGTKRKHIEG---MTDWENKLCRKILLNLFVHSDSLPFHHKVSKAQAPDYYKVITRPMDLNTILTKLSPNHFENFQMLAS---FISDIRLVFSNCFVYNSAESEVCKMGRRLEGFFDQLLRKYVPHELHYP 979
            E+  ++  NED+C VC+NGGELLCC+ CPKV+HL CH+P+L   PS  W C  C+D+ K       ++ +  +++K  EG   +T  + + C ++LL L+ H  SL F   V     PDYYK+I  PMDL+TI  +L     E++ M +    F++D RL+F NC  +N  +SEV   G +LE +F++LL+   P E  +P
Sbjct:  817 ETRKEDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVP-LTVPDYYKIIKNPMDLSTIKKRLQ----EDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP-EKRFP 1011
The following BLAST results are available for this feature:
BLAST of TCONS_00021584-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIF1A2.944e-5833.07Transcription intermediary factor 1-alpha OS=Homo ... [more]
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