TCONS_00021358-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021358-protein
Unique Name	TCONS_00021358-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	938

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021358-protein ID=TCONS_00021358-protein|Name=TCONS_00021358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=938bp
MSEKSKQEEENAEDDKKSGRLKEEVISYFKRVEQVLLEDAFEDGNHKEAF
VKNVFLEVEKEGMQLGRHPITSRVLEQLIPLLSDTQYETLILLMEKEVET
LCTDRFASHVVELFCKEIIKHMTEEPVADAFLGLCKNIKKQVDVFLRDTY
GSHVLSTLLQTLSGVQVPETITKSRISRESKKVKKKKKKPQHPQMFQNNV
NLKDSVTTSEVPDSFHKMYRRFLKTIKDDDNFGELLCHRTASPVLQVLVI
TLQKVSTEKFAQMTELIVRKARIEMTSPNNKDGGEGVDDSDESEEEEDED
TFHKLPVVLTDQVGSHLFEVLLQTADEETFDNLTVRCMLKMLVSLSIHPI
ANFLVQTMLRCMDKKKKAKPFIRKLSKFTEDILAAGHMGCIVRVAESISR
LGLSDQEEKFIETLTRSLHIPEDPEKMEKSFCKLVLSMMTHDIFYKVELI
PSGEPDHSXKKKPQHPQMFQNNVNLKDSVTTSEVPDSFHKMYRRFLKTIK
DDDNFGELLCHRTASPVLQVLVITLQKVSTEKFAQMTELIVRKARIEMTS
PNNKDGGEGVDDSDESEEEEDEDTFHKLPVVLTDQVGSHLFEVLLQTADE
ETFDNLTVRCMLKMLVSLSIHPIANFLVQTMLRCMDKKKKAKPFIRKLSK
FTEDILAAGHMGCIVRVAESISRLGLSDQEEKFIETLTRSLHIPEDPEKM
EKSFCKLVLSMMTHDIFYKVELIPSGEPDHSLKNDAINYHGACLLKSCLF
FKKCQMLAKSLLSLNKEELTTVACHPSGNHVFESFLSNTNIKKKMKNSLS
DMFRGKFAVLASDKFGSRVIDALWKNVGEESKDFIKTELTQNKSRLESDL
YGRIVLCNCEINQQARKMREIKEKQDKKRKIFEDILPVSKKEEKSVMVKE
EEQPPAKKAKGKNKNDRVAKYREQLKALGISFDDEEQT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011961	XLOC_011961	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021358	TCONS_00021358	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001313	Pumilio_RNA-bd_rpt
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001313	Pumilio RNA-binding repeat	SMART	SM00025	pum_5	coord: 610..646 e-value: 4.5 score: 15.5 coord: 764..801 e-value: 46.0 score: 7.8 coord: 802..837 e-value: 0.037 score: 23.2 coord: 93..128 e-value: 16.0 score: 11.2 coord: 137..172 e-value: 4.1 score: 15.8 coord: 300..335 e-value: 17.0 score: 11.0 coord: 573..608 e-value: 17.0 score: 11.0 coord: 337..373 e-value: 4.5 score: 15.5 coord: 57..92 e-value: 200.0 score: 2.9
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 408..872 e-value: 1.3E-27 score: 96.2 coord: 28..279 e-value: 1.9E-19 score: 69.3 coord: 299..407 e-value: 8.9E-12 score: 44.1
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 40..159 coord: 210..252
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 576..636 coord: 677..859
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 302..363 coord: 489..552

Blast

[Close]

BLAST of TCONS_00021358-protein vs. Swiss-Prot (Human)
Match: NOP9 (Nucleolar protein 9 OS=Homo sapiens GN=NOP9 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.144e-25
Identity = 72/286 (25.17%), Postives = 138/286 (48.25%), Query Frame = 0

Query:  615 LVSLSIHPIANFLVQTMLRCMDKKKKAKPFIRKLSKFTEDILAAGHMGCIVRVAESISRLGLSDQEEKFIETLTRSLHIPEDPEKMEKSFCKLVLSMMTHDIFYKVE----LIPSGEPDHSLKNDAINYHGACLLKSCL------FFKKCQMLAKSLLSLNKEELTTVACHPSGNHVFESFLSNTNIKKKMKNSLSDMFRGKFAVLASDKFGSRVIDALWKNVGEESKDFIKTELTQNKSRLESDLYGRIVLCNCEINQQARKMREIKEKQD----KKRKIFEDIL 886
            L +L+ HPIANF +Q +L  +   +   P   +LS   E +LA GH G ++ +  +  R+G    + K ++ L  + H  E P   + +   L  ++M ++++Y +      +P+   +H +   A    G   +   L       F    ++ +SL +L   +L ++A  P+G+HV ++ L++ ++ +K++  +    +G++  LA  + GSRV+DA+W      ++  I  EL +    L  D +G  V  N  +    ++ RE  E+Q     K+R+    IL
Sbjct:  356 LQTLAAHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVG--AYQAKVLQLLLEAFHCAE-PSSRQVACVPLFATLMAYEVYYGLTEEEGAVPA---EHQVAMAAARALGDVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKLRRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHVARNVALTTFLKR-REAWEQQQGAVAKRRRALNSIL 634

HSP 2 Score: 84.3445 bits (207), Expect = 1.350e-16
Identity = 100/450 (22.22%), Postives = 180/450 (40.00%), Query Frame = 0

Query:   21 LKEEVISYFKRVEQVLLEDAFEDGNHKEAFVKNVFLEVEKEGMQLGRHPITSRVLEQLIPLLSDTQYETLILLMEKEVETLCTDRFASHVVELFCKEIIKHMTE-----------------EPVADAFLGLCKNIKKQVDVFLRDTYGSHVLSTLLQTLSGVQVPETITKSRISR--ESKKVKKKKKKPQHPQMFQNNVNLKDSVTTSEVPDSF----HKMYRRFLKTIKDDDNFGELLCHRTASPVLQVLVITLQKVSTEKFAQMTELIVRKARIEMTSPNNKDGGEGVDDSDESEEEEDEDTFHKLPVVLTDQVGSHLFEVLLQTADEETFDNLTVRCMLKMLVSLSIHPIANFLVQTMLRCMDKKKKAKPFIRKLSKFTEDILAAGHMGCIVRVAESISRLGLSDQEEKFIETLTRSLHIPEDPEKMEKSFCKLVLSMMTHDIFYKV 447
            L  E + YF+R    L ++A E G  ++  V N+  EVE + + L  +   S +L++L+          +   +   + T+   R   HV++    ++ + +                   E + +  LGL   +     V+  DT+GS V+ TLLQ L G  +     + R S+  E++K   ++ KP                   EVP++F      +   FLK I         +  + +S  LQV +  L +   +  A +   ++               G  VD S              L + L DQ  S L E +L   +     +L    +   L +L+ HPIANF +Q +L  +   +   P   +LS   E +LA GH G ++ +  +  R+G    + K ++ L  + H  E P   + +   L  ++M ++++Y +
Sbjct:   57 LSPEALGYFRRALSAL-KEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLKPLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLEELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQECKP----------------ADFEVPETFLNRLQDLSSSFLKDI------AVFITDKISSFCLQVALQVLHRKLPQFCAHLCNAVIGYLSTR---------GSSVDGS-------------PLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLAAHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVG--AYQAKVLQLLLEAFHCAE-PSSRQVACVPLFATLMAYEVYYGL 458

The following BLAST results are available for this feature:

BLAST of TCONS_00021358-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021358-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOP9	3.144e-25	25.17	Nucleolar protein 9 OS=Homo sapiens GN=NOP9 PE=1 S...	[more]

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TCONS_00021358-protein (polypeptide) - C. hemisphaerica