TCONS_00021350-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021350-protein
Unique NameTCONS_00021350-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021350-protein ID=TCONS_00021350-protein|Name=TCONS_00021350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MATEFNSPSTPSASRHEKSLGLLTTKFVTLLQEAKDGVLDLKVAADQLAV
RQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNSSEVSAKLRDLKT
ELDRLDSIERILDEQKLWVQQSLKNVSEDPDNERHAYVSHDDICNCYQGE
TLLAIQAPSGTQLEVPPPEIQQGQRPKYQMHLNSSNGSICVLLVNHDTKS
DTPVVVPVPPPDQDDSTSRTTLPSSSSTATDTKKNVKSSTVIKEETIEER
LQNPMASGGQDPSLVESEQITELEDINLDNFCKDTDAFTPLLRLSPPPGD
QDYYFNLDDSEGVCDLFDVPLKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011960XLOC_011960Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021350TCONS_00021350Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003316E2F_WHTH_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR032198E2F_CC-MB
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005667transcription factor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003316E2F/DP family, winged-helix DNA-binding domainSMARTSM01372E2F_TDP_2coord: 15..81
e-value: 1.2E-33
score: 127.8
IPR003316E2F/DP family, winged-helix DNA-binding domainPFAMPF02319E2F_TDPcoord: 17..81
e-value: 4.2E-24
score: 84.3
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 9..84
e-value: 4.7E-28
score: 96.6
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 15..79
IPR032198E2F transcription factor, CC-MB domainPFAMPF16421E2F_CC-MBcoord: 98..195
e-value: 1.0E-27
score: 96.3
IPR032198E2F transcription factor, CC-MB domainCDDcd14660E2F_DDcoord: 93..197
e-value: 7.96876E-39
score: 133.412
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..240
NoneNo IPR availableSUPERFAMILY144074E2F-DP heterodimerization regioncoord: 94..196

Blast
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BLAST of TCONS_00021350-protein vs. Swiss-Prot (Human)
Match: E2F5 (Transcription factor E2F5 OS=Homo sapiens GN=E2F5 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 2.753e-107
Identity = 185/313 (59.11%), Postives = 222/313 (70.93%), Query Frame = 0 
Query:   13 ASRHEKSLGLLTTKFVTLLQEAKDGVLDLKVAADQLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGAGPGCNSSEVSAKLRDLKTELDRLDSIERILDEQKLWVQQSLKNVSEDPDNERHAYVSHDDICNCYQGETLLAIQAPSGTQLEVPPPEIQQGQRPKYQMHLNSSNGSICVLLVNHDTKSDTPVVVPVPPPDQDDSTSRTTLPSSSS-TATDTKKNVKSSTVIKEETIEER---LQNPMASGGQDPSLVESEQITELEDINLDNFCKDTDAFTPLLRLSPPPGDQDYYFNLDDSEGVCDLFDVPL 321
            +SRHEKSLGLLTTKFV+LLQEAKDGVLDLK AAD LAVRQKRRIYDITNVLEGI LIEKKSKNSIQWKG G GCN+ EV  +LR LK E++ L+  ER LD+QKLW+QQS+KNV +D  N R +YV+H+DICNC+ G+TLLAIQAPSGTQLEVP PE+ Q  + KYQ++L S +G I VLL+N ++ S  PVV PVPPPD        T PSS S T    +K+  ++  + E+ + ER   LQ   A+       +  + I EL           +D F PLLRLSP P D DY FNLDD+EGVCDLFDV +
Sbjct:   48 SSRHEKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPDD------LTQPSSQSLTPVTPQKSSMATQNLPEQHVSERSQALQQTSATDISSAGSISGDIIDEL---------MSSDVF-PLLRLSPTPAD-DYNFNLDDNEGVCDLFDVQI 343
The following BLAST results are available for this feature:
BLAST of TCONS_00021350-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E2F52.753e-10759.11Transcription factor E2F5 OS=Homo sapiens GN=E2F5 ... [more]
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