TCONS_00021293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021293-protein
Unique NameTCONS_00021293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1296

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021293-protein ID=TCONS_00021293-protein|Name=TCONS_00021293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1296bp
MVHHNKNRKDKFQKLAEKNGLTSSINSNASFASDSNRGQNNSRIDNEYDR
PLSKSSMISNNSKHGSSNHRVKFANDRTNDRANEVSNSRIQRIRGSFHKR
KPNSTKVLLLRRNREIGFGFSIRGGVEHGTGIFISNINKYSDAQAQGLQI
GDQILRANNALFEGIVHDEAVGYIQRQKILQLIVLSLGVIPGNKIALTEY
QWMDCYGQPCSPMTSRAEERINESQLKSINPSRHLLSAEDERKINIDVGN
SATLGLLIRGGSEYGLGIFVVGIDQDSVADQCGIMVGEQILEINGIDFVN
ITHADAAEIIRTSRRMTMVLKDVGKIPLSRVVYDRQEWIRKKQIMQREQQ
IRERKKDLIIQEGLPGRLSSHQSLASPVSFQWVEEKARGLLNQDEWATLK
YYIREYARQNLTVNELGLSLLDLFDSDEKMTLIDEIRGIVPPQDIEHFDE
LMLSMEVASMTKNRSNRQSYRADVSLRGRFHGNDEEYDEEYGDQNLANRK
GSRVEFGYQPNPSNTFVGDTTDFNYGVLNEDTYQSVFDEITDETDLSTTQ
STKHRTLLDDAMNGFDKLETVDENEDEMEDEEPLYAKVVKPRLTEYENNR
SPQQELKTFQSPQNERHIYQSPPKDRKPLKSPAIMRRWHDDEEENEEENQ
NGGEEAGIDNLGFAFSFLGSQENSKENSPKISQREDIYSSPHLSNYSPKT
SQRESERSINSRGGMGNNTSPLVSNGVSRENSFHSYQPKSFGMYQQEPLG
RFNSYEEKNEKREQEDKSEYKIVGSFEEASYSNKKSGSSPTVDEPPEFNL
TKSLDKHYSNFSVNDIVRQNFLPTTRVYGESSEQENEIKSIINTRNNSTN
IGESGSGNRLSLTRLSSLNIQNQYQYQETSRSLSPTPEKTDFLGSSQTSN
ILSSETYGKPVVSPRPPIENNSTPSENTNFTPSPLPPPPPSLLENTPDNT
IERLGKIFNSTTTKYTRPTRLFPNGTNNPITEPEINYYSMDRLKKTERGD
ALLGRGNASIENLNNIDPQLESPVIEYRASKLLGTMSLSIEKLDENDNPI
ITSPPRRTSQNDRNPIDFAFQSHENRSPRFDVSPRNALSSYNTEDINIVR
GSHQIVEGETNVSTLRRRIDQSIHLQNTSAVKPKQHSAIVTENQKTLPKW
VKQTDFRPKVTNPKYKDVASPREASNQLKSRIDVFSKPKHDPQASIENFR
KIKRGNDGLPRTVSIPNMRDDDPGFSVNVRTNQNGEQEIYVAKITKNTLH
QIEVDDVIIVVGDHKFKAGVKQGLANLIIKNKFSSTEDSEVTLTIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011922XLOC_011922Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021293TCONS_00021293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 252..324
e-value: 1.8E-15
score: 67.4
coord: 116..188
e-value: 1.1E-11
score: 54.8
IPR001478PDZ domainPFAMPF00595PDZcoord: 110..184
e-value: 1.3E-11
score: 44.6
coord: 250..317
e-value: 1.8E-8
score: 34.5
IPR001478PDZ domainPROSITEPS50106PDZcoord: 243..313
score: 14.657
IPR001478PDZ domainPROSITEPS50106PDZcoord: 106..176
score: 14.697
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 241..338
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 96..206
NoneNo IPR availableGENE3D2.30.42.10coord: 1204..1296
e-value: 0.019
score: 14.4
NoneNo IPR availableGENE3D2.30.42.10coord: 236..326
e-value: 7.9E-17
score: 60.7
NoneNo IPR availableGENE3D2.30.42.10coord: 86..201
e-value: 2.3E-15
score: 55.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 876..946
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 595..631
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 671..735
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 779..798
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..70
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 110..185
e-value: 2.37876E-16
score: 75.2958
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 241..321
e-value: 5.69219E-18
score: 79.9182

Blast
[Close]
BLAST of TCONS_00021293-protein vs. Swiss-Prot (Human)
Match: WHRN (Whirlin OS=Homo sapiens GN=WHRN PE=1 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 4.590e-72
Identity = 142/373 (38.07%), Postives = 216/373 (57.91%), Query Frame = 0 
Query:  102 PNSTKVLLLRRNREI-GFGFSIRGGVEHGTGIFISNINKYSDAQAQGLQIGDQILRANNALFEGIVHDEAVGYIQRQKILQLIVLSLGVIPGNKIALTEYQWMDCYGQPCSPMTSRAEE-----RINESQLKSINPSRHLLSAEDERKINIDVGNSATLGLLIRGGSEYGLGIFVVGIDQDSVADQCGIMVGEQILEINGIDFVNITHADAAEIIRTSRRMTMVLKDVGKIPLSRVVYDRQEWIRKKQIMQREQQIRERKKDLIIQ--------EGLPGRLSSHQSLASPVSFQWVEEKARGLLNQDEWATLKYYIREYARQNLTVNELGLSLLDLFDSDEKMTLIDEIRGIVPPQDIEHFDELMLSMEVASM 460
            P   +++ LRR +   G GFSIRGG EHG GI++S +   S A+ +GL++GDQILR N+     + H EAV  ++  K L L V S G IPG  +    Y W+D  G+  SP +   +      R  E   +S   + HLL   DE+K+N+ +G+  +LGL IRGG+EYGLGI++ G+D  S A+  G+ VG+QILE+NG  F+NI H +A  ++++SR + + +KDVG++P +R   D  +WI   +I +          DL  +        +G  G   +  SL +      +EE+AR LLN+ E AT+ YY+ EY   +++V  L ++L  L ++  K +L+ E+RG + PQD+E FD L+L  E+ SM
Sbjct:  135 PGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQGRSISPPSGLPQPHGGALRQQEGDRRS---TLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRLPRARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQVTLSSLGNQTRV-LLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKFSLLSEVRGTISPQDLERFDHLVLRREIESM 503
The following BLAST results are available for this feature:
BLAST of TCONS_00021293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WHRN4.590e-7238.07Whirlin OS=Homo sapiens GN=WHRN PE=1 SV=3[more]
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