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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00021215-protein ID=TCONS_00021215-protein|Name=TCONS_00021215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1231bp
MVYHTNTPMNGTYPAFRPDPGSMVEGKIAEQNNINKYGDMRRNGAGDNLK
SRLIEHMKQEPVDQGYEQISQQNNYNWGNRQNSVHKAACDSTSNVSPPRR
NTNNEFAVPLHPSEYRQLNKINTPDKSLSYITPFTPAEYLSSRAGSYSDR
PTSTATSLKSGYMDMPGSRNSGSLSRHSARGKKRMLSVSPIFDCLNDIIR
TSPNSLVAFVNNNDLRSGFISRSSTGRNSSAASHASHSSYGHLSPAPASQ
PIAMSRQRNHFASNETYTPSLQSQQFIQHPRRLPMPPPTQIREQVSSSTG
DIPPPNFPPPGVTNRPSPQRTIQNKPREEELSPKQHSPGKPDSNEFSPSE
ATPKSNTTEHGGADSADDEEEGVDLRCKWRDCGVLFDAQSKLVQHVNTEH
IQKNKKDCTCYWEDCSRDEKPFKAMYMLVVHVRRHTGEKPHKCHYDGCDK
AYSRLENLKTHLRSHTGERPYLCEVPGCEKAFSNASDRAKHQNRTHSSVK
QYGCKVAGCTKRYTDPSSLRKHMKTVHGALPQPNKKVKVDHKAIKKEEHS
PINIKVEVPEDDPKSPNKRKNTSSEECSPSKHSPAYNGHHDAGGNGRSPI
YSASLNGFNGYNDYAMGGSGTGGGGYNRGGANNGHHQTIVSSTTNYDIGR
NWSNDPVASSNNGGNGPIVPIDNDPLNLRDDFMQMGVDGGGMINGVGVNL
QVQMRIPTQQNIGQPHLGKPIDLYSNDVNRRLSNGSLKGLTPRRESNVST
LSADSSYSSGTELPMAGGRRDSTHSTISYVSGGRRSATLPSPLPSRNLSP
GRINQTVIEGEVLDEFTSQQTGAQLPIQQDISASYVDTNNVNYSRGSSGY
GSQQTYFAPKTPSPMSPSPPSREIRRASEGTVRRVSDSAVSGVPSIKEKL
QYRRASDPVKVQRVMDNTPRRTSFSTFSVLPTLSNQQQNQQNQLNNNNNN
QQQQFQQNMFQQNMNSQQQQQQQQQMQFQNSTNLMVTPQQNLSVATTSQN
NMDSVVYAQPDSTSNVGNNMLTNTNDLSMLMDTFNMQQSIPQQVPQDPLQ
LNMENVNLQQPQPQQMFNNNQLPSPSTLSMNNTPPRLSHMHMNNQTFNNN
SNNMPTNNGGASNFVVPHPPATRRNTVQQISQPCAIDTDNNYDFTLQWRN
EHFGARSQQNNQPQQVIEPDSTAIDKDLESLMVNSMASLNTQQNARPKTN
MAINRMDSLMNSYAEENKYFEYSSNAVERYQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 934..954 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 441..465
e-value: 0.0012
score: 19.0
coord: 504..527
e-value: 3.5E-4
score: 20.8 |
| None | No IPR available | GENE3D | 2.20.28.30 | | coord: 459..481
e-value: 7.7E-8
score: 31.9 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 374..406
e-value: 2.3E-8
score: 33.5
coord: 407..430
e-value: 6.2E-9
score: 35.2 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 482..513
e-value: 1.2E-11
score: 44.3 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 431..458
e-value: 2.6E-16
score: 58.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 515..598 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 143..181 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 734..801 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 269..370 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 222..249 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 858..881 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 408..435
e-value: 35.0
score: 8.5
coord: 375..400
e-value: 0.36
score: 19.9
coord: 441..465
e-value: 0.0023
score: 27.2
coord: 471..496
e-value: 0.06
score: 22.5
coord: 502..527
e-value: 6.1E-4
score: 29.1 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 443..465 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 504..527 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 473..496 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 377..400 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 502..527
score: 10.034 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 441..470
score: 14.44 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 375..405
score: 8.933 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 471..501
score: 11.136 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 413..440
score: 9.972 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 375..404 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 422..480 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 469..497 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 482..527 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 514..578
e-value: 0.0077
score: 15.7 |
| IPR011990 | Tetratricopeptide-like helical domain | GENE3D | 1.25.40.10 | | coord: 647..982
e-value: 3.3E-5
score: 22.5 |
Blast
BLAST of TCONS_00021215-protein vs. Swiss-Prot (Human)
Match: GLI3 (Transcriptional activator GLI3 OS=Homo sapiens GN=GLI3 PE=1 SV=6) HSP 1 Score: 288.886 bits (738), Expect = 7.875e-80 Identity = 194/470 (41.28%), Postives = 249/470 (52.98%), Query Frame = 0
Query: 113 SEYRQLNKINTPDKSLSYITPFTPAEY------LSSRAGSYSDRPTSTATSLKSG-YMDMPGSRNSGSLS--RHSAR-GKKRMLSVSPI----FDCLNDIIRTSPNSLVAFVNNNDLRSGFISRSSTGRNSSAASHASHSSYGHLSPA---PA------SQPIAMSRQRNHFASNETYTPSLQSQQFIQHPR-----RLPMPPPTQIREQVSSSTGDIPPPNFPPPGVTNRPSPQRTIQNKPREEELSPKQHSPG-------KPDSNEFSPS----EATPKSNTT--EHGGADSADDEEEGV-DLRCKWRDCGVLFDAQSKLVQHVNTEHIQKNKKDCTCYWEDCSRDEKPFKAMYMLVVHVRRHTGEKPHKCHYDGCDKAYSRLENLKTHLRSHTGERPYLCEVPGCEKAFSNASDRAKHQNRTHSSVKQYGCKVAGCTKRYTDPSSLRKHMKTVHGALPQPNKKVKVD 540
S R L+ + P +S PAEY L+ + Y+D S AT+ +M+ + +S S R SAR +KR LS+SP+ FD L +IRTSPNSLV +NN S +S ++ SYGHLS + PA S P+++ + + ++ + + HP + P+P + V S+G P + QNKP E P KPD + SP + P+ T E G D + E E + + C W C FD Q +LV H+N +HI KK+ C W DCSR++KPFKA YMLVVH+RRHTGEKPHKC ++GC KAYSRLENLKTHLRSHTGE+PY+CE GC KAFSNASDRAKHQNRTHS+ K Y CK+ GCTKRYTDPSSLRKH+KTVHG KK + D
Sbjct: 217 SATRGLSPTDAPHAGVS------PAEYYHQMALLTGQRSPYADIIPSAATAGTGAIHMEYLHAMDSTRFSSPRLSARPSRKRTLSISPLSDHSFD-LQTMIRTSPNSLVTILNN-----------------SRSSSSASGSYGHLSASAISPALSFTYSSAPVSLHMHQQILSRQQSLGSAFGHSPPLIHPAPTFPTQRPIPGIPTVLNPVQVSSG-----------------PSESSQNKPTSESAVSSTGDPMHNKRSKIKPDEDLPSPGARGQQEQPEGTTLVKEEGDKDESKQEPEVIYETNCHWEGCAREFDTQEQLVHHINNDHIHGEKKEFVCRWLDCSREQKPFKAQYMLVVHMRRHTGEKPHKCTFEGCTKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRGD 645
The following BLAST results are available for this feature:
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