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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00021140-protein ID=TCONS_00021140-protein|Name=TCONS_00021140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MPRSFLIKKTNLRFSSVTCTDKRGTILPLDDLEQKEVFITEKEQRLIEED
EDEKSYSTISMCRTPIPPYYLKKIEEGGEEQKERMEDKHNVRASEQGRPS
PDSPHSRHFPPPQEYTFLPIKHMGHRDHEVPSRYGSRTPEYFLPPNNGPI
SHHSYDRFASYFPSPHSPEAINNKHHKIPIRHLYFKNPPPRWSPNEYDGR
LVESPNSQIGFWRQLHPLNYSHQPSMDIENPTKVKSQDGDRYGCSQCDKA
FNTVHGLEVHVRRSHAGKVRPHRCDLCGKTFGHKISLEQHKETIHSAFRS
FDCTECGKSFKRSSTLSTHMLIHSNTRPYSCGYCGKRFHQKSDMKKHTYV
HTGERPYKCGACNKSFSQSSNLITHMRKHSGFKPFHCDLCSREFYRKVDL
RRHLFIHHKDFIVSRNATGIVGNEKLVR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 29..49 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 365..374
e-value: 4.5E-8
score: 32.8 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 375..410
e-value: 3.3E-15
score: 55.3 |
| None | No IPR available | GENE3D | 2.20.28.30 | | coord: 312..340
e-value: 3.2E-18
score: 65.3 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 272..295
e-value: 0.01
score: 16.1
coord: 244..265
e-value: 0.0043
score: 17.3
coord: 357..379
e-value: 4.3E-7
score: 29.9
coord: 329..351
e-value: 0.0022
score: 18.2
coord: 301..323
e-value: 3.7E-6
score: 27.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 283..311
e-value: 9.6E-15
score: 54.2
coord: 253..282
e-value: 5.8E-12
score: 45.3
coord: 341..364
e-value: 1.3E-19
score: 69.7
coord: 174..252
e-value: 0.0012
score: 18.7 |
| None | No IPR available | PFAM | PF12874 | zf-met | coord: 385..404
e-value: 0.012
score: 15.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 78..115 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 301..323
e-value: 0.0012
score: 28.1
coord: 272..295
e-value: 0.0038
score: 26.5
coord: 242..265
e-value: 0.0054
score: 26.0
coord: 357..379
e-value: 2.2E-4
score: 30.6
coord: 385..407
e-value: 0.011
score: 24.9
coord: 329..351
e-value: 0.0032
score: 26.7 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 244..265 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 359..379 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 303..323 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 331..351 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 274..295 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 329..356
score: 16.228 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 357..384
score: 15.833 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 242..270
score: 11.884 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 272..300
score: 12.154 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 385..407
score: 10.471 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 301..328
score: 15.583 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 309..366 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 267..310 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 351..403 |
Blast
BLAST of TCONS_00021140-protein vs. Swiss-Prot (Human)
Match: GFI1B (Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 1.274e-81 Identity = 129/213 (60.56%), Postives = 156/213 (73.24%), Query Frame = 0
Query: 191 RWSPNEYDGRLVESPNSQIGFWRQLHPLNYSHQPSMDIENPTKVKSQDGDRYGCSQCDKAFNTVHGLEVHVRRSHAGKVRPHRCDLCGKTFGHKISLEQHKETIHSAFRSFDCTECGKSFKRSSTLSTHMLIHSNTRPYSCGYCGKRFHQKSDMKKHTYVHTGERPYKCGACNKSFSQSSNLITHMRKHSGFKPFHCDLCSREFYRKVDLRRH 403
R +P+ +E S G PL S +P++D + S D Y C +C+K F+T HGLEVHVRRSH+G RP CD+CGKTFGH +SLEQH +HS RSF+C CGK+FKRSSTLSTH+LIHS+TRPY C +CGKRFHQKSDMKKHTY+HTGE+P+KC C K+FSQSSNLITH RKH+GFKPF C+LC++ F RKVDLRRH
Sbjct: 120 RQAPSTMQSAFLEHSVSLYG-----SPLVPSTEPALDF---SLRYSPGMDAYHCVKCNKVFSTPHGLEVHVRRSHSG-TRPFACDICGKTFGHAVSLEQHTH-VHSQERSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRH 322
The following BLAST results are available for this feature:
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