TCONS_00021096-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021096-protein
Unique NameTCONS_00021096-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021096-protein ID=TCONS_00021096-protein|Name=TCONS_00021096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MALLLTIIGRLVDGLPLAASMPSDEQGNRNIQEYQSQAKNLFKKLNERSP
AKCSIESEPYIFHYSLDIHNGVCYLVMTEKTFSKRQAFSYLDDIQKEFAL
QYGGYVPTARRPYCFIEFDTYMQKAKKNFSDGRSGRNRNLGRLNDELQGV
QKIMIQNIDDVLQRGENLSVLDDKAGQLRFQSEKYKKDAKFLNLRTVYAK
YAVIGVLCLVFLIYIRYWWL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011827XLOC_011827Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021096TCONS_00021096Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR010908Longin_dom
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001388SynaptobrevinPRINTSPR00219SYNAPTOBREVNcoord: 144..163
score: 32.16
coord: 164..183
score: 40.0
coord: 197..216
score: 17.7
IPR001388SynaptobrevinPFAMPF00957Synaptobrevincoord: 137..217
e-value: 9.1E-18
score: 63.7
IPR001388SynaptobrevinPROSITEPS50892V_SNAREcoord: 139..199
score: 14.274
IPR010908Longin domainSMARTSM01270Longin_2coord: 37..121
e-value: 6.0E-31
score: 118.8
IPR010908Longin domainPFAMPF13774Longincoord: 38..120
e-value: 4.9E-22
score: 77.7
IPR010908Longin domainPROSITEPS50859LONGINcoord: 7..122
score: 29.367
NoneNo IPR availableGENE3D3.30.450.50coord: 2..148
e-value: 4.5E-43
score: 146.3
NoneNo IPR availableGENE3D1.20.5.110coord: 149..220
e-value: 3.4E-20
score: 71.0
NoneNo IPR availableCDDcd15866R-SNARE_SEC22coord: 137..200
e-value: 2.26702E-29
score: 104.524
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 136..198
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 4..129

Blast
[Close]
BLAST of TCONS_00021096-protein vs. Swiss-Prot (Human)
Match: SC22B (Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=4)

HSP 1 Score: 252.677 bits (644), Expect = 1.003e-85
Identity = 119/218 (54.59%), Postives = 157/218 (72.02%), Query Frame = 0 
Query:    3 LLLTIIGRLVDGLPLAASMPSDEQGNRNIQEYQSQAKNLFKKLNERSPAKCSIESEPYIFHYSLDIHNGVCYLVMTEKTFSKRQAFSYLDDIQKEFALQYGGYVPTARRPYCFIEFDTYMQKAKKNFSDGRSGRNRNLGRLNDELQGVQKIMIQNIDDVLQRGENLSVLDDKAGQLRFQSEKYKKDAKFLNLRTVYAKYAVIGVLCLVFLIYIRYWWL 220
            +LLT+I R+ DGLPLAASM  DEQ  R++Q+YQSQAK LF+KLNE+SP +C++E+    FHY   I  GVC LV+ E  F K  AF+YL+D+  EF  Q+G  VPT  RPY FIEFDT++QK KK + D  S   RNLG +N ELQ VQ+IM+ NI++VLQRGE LS LD KA  L   S+KY++DAK+LN+ + YAK A + V  ++ ++Y+R+WWL
Sbjct:    2 VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYI--IEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYID--SCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMHSTYAKLAAVAVFFIMLIVYVRFWWL 215
The following BLAST results are available for this feature:
BLAST of TCONS_00021096-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC22B1.003e-8554.59Vesicle-trafficking protein SEC22b OS=Homo sapiens... [more]
back to top