TCONS_00021016-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021016-protein
Unique Name	TCONS_00021016-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	878

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021016-protein ID=TCONS_00021016-protein|Name=TCONS_00021016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=878bp
MQMFLTSIIIFVTLLVQNTRPCDEDYQILNHQNKYQLFSSTKHGTYMIQS
LMSVSEGGPCDRISIGGLIRVLAVKFAIETRKVATNLSIGYRIDDTCLNL
PVTMNRGIEIINSHEQTTCLATNQNTCPTNHNVRKSNIFLAVIGGYFSFT
TIPLSSLLSAYSIPQLSFGASSPLLSKRSLYKTTFRSIPSDESAVQALID
VVGKFGWTYIYVIGSDDEYGKIGVHLLKKHAAENDVCITGEMYIPFESKD
TQRIAKEIALDMQKQENATVVVMFNYALKMGEYILQEASHLNLSRLYLTG
EAWNPEVLSSANIPVEQLESVVTVSLEYGQPSQKFLDYVNETINSCYDKD
IWLKQYIFQQSGCLVTSNDDFGRLTGKDLNNKTCEIESNDILQRILNDNP
SQINNLIDLVDSVSNALDGFTSKNCPLSSIDCGTSIKPSQVSEALKAVDF
QTRRGDPFKYDPNGNPVYVSYSIEQIQFDAVSGQHKYEQLGRWESQREKR
LDIDKAMIRIPSWSGNEMPTSSCSEKCVAGEKITAKQRCCWKCERCPKGS
ISTEPNSLQCSPCTKGYHTKDFINCELTPIKHITLEDTIGLTTTIISCIG
IVLMFLCLYLLRYLKETAIVKSMDVRFVASSTLLVLTSFCYTFLHLILPT
NNICRVRNIFFHALLTLFSMVLLLKNRSVSRFISKFVNNKQSSTFAGALI
SAFILVLETAFILVWQFMESFPVTKTQANYEYFEECKLEFSLYRMLAFVL
PFIITVIASVQSLSESHAKVQFGEYKFLHYTCLAFCIINVAHIITLNLVN
NRYQVLVLLITTMSYGYVYMGCIICTKIFHGFSSPKQESKQVMGVCNIGF
ETNKTSENETGSQSISKRFSKSKELQTL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011787	XLOC_011787	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021016	TCONS_00021016	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR001828	ANF_lig-bd_rcpt
IPR017978	GPCR_3_C
IPR011500	GPCR_3_9-Cys_dom
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 142..168 score: 35.65 coord: 210..227 score: 27.6 coord: 773..794 score: 32.39 coord: 78..97 score: 31.41 coord: 194..210 score: 35.48 coord: 175..194 score: 37.03
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 72..477 e-value: 2.6E-44 score: 151.7
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 601..829 e-value: 1.6E-10 score: 41.1
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 589..841 score: 13.268
IPR011500	GPCR, family 3, nine cysteines domain	PFAM	PF07562	NCD3G	coord: 519..567 e-value: 8.4E-9 score: 35.2
None	No IPR available	GENE3D	3.40.50.2300		coord: 57..467 e-value: 1.8E-41 score: 141.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 856..878
None	No IPR available	CDD	cd06350	PBP1_GPCR_family_C_like	coord: 60..369 e-value: 2.98966E-42 score: 157.148
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 56..495

Blast

[Close]

BLAST of TCONS_00021016-protein vs. Swiss-Prot (Human)
Match: GRM3 (Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 5.746e-53
Identity = 192/833 (23.05%), Postives = 360/833 (43.22%), Query Frame = 0

Query:   43 HGTYMIQSLMSVSEGG----PCDRISIG-GLIRVLAVKFAIE----TRKVATNLSIGYRIDDTCLNLPVTMNRGIEIINSHEQTTCLATNQNTCPTNHNVRKSNIFL---AVIGGYFSFTTIPLSSLLSAYSIPQLSFGASSPLLSKRSLYKTTFRSIPSDESAVQALIDVVGKFGWTYIYVIGSDDEYGKIGVHLLKKHAAENDVCITGEMYIPFESKDTQRIAKEIALDMQKQENATVVVMFNYALKMGEYILQEASHLNLSRLYLTGEAWNPEVLSSANIPVEQLESVVTVSLEYG-QPSQKFLDYVNETINSCYDKDIWLKQYIFQQSGCLVTSNDDFGRLTGKDLNNKTCEIESNDILQRILNDNPSQINNLIDLVDSVSNALDGFTSKNCPLSSIDCGTSIKPSQVSEALKAVDFQTRRGD---------PF----------KYDPNGNPVYVSYSIEQIQFDAVSGQHKYEQLGRWESQREKRLDIDKAMIRIPSWSGNEMPTSSCSEKCVAGE--KITAKQRCCWKCERC-PKGSISTEPNSLQCSPCTKG-YHTKDFINCELTPIKHITLEDTIGLTTTIISCIGIVLMFLCLYLLRYLKE--TAIVKSMDVRFVASSTLLVLTSFCYTFLHLILPTNNICRVRNIFFHALLTLFSMVLLLKNRSVSRFISKFVNNKQSSTFAGALISAFI----LVLETAFILVWQFMESFPVTKTQANYEYFEECKLEFSLYR---MLAFVLPFIITVIASVQSLSESHAKVQFGEYKFLHYTCLAFCIINVAHIITLNLVNNRYQV--LVLLITTMSYGYVYMGCIICTKI 828
             G  ++  L  ++E G     C RI+   G+ R+ A+ FAI+       +   + +G  I DTC      + + +E + +    T +   +  CP      + NI L    VIGG +S  +I +++LL  + IPQ+S+ ++S  LS +S Y    R++P D    +A+ +++  F WTY+  + S+ +YG+ G+   ++ A   ++CI     +     + ++    +  ++ ++ NA VVV+F  +    E ++  AS  N S  ++  + W  +    + I   +  +   ++LE   QP ++F  Y          ++ W + +  Q+  C + +  +  R+  K L      I+S++  Q       S+I  +++ V ++++AL       CP            +++ +A+K +D +    D         PF          K+D  G+ +   Y++    F  V G++ Y ++G W     + L +D   I    WS N +PTS CS+ C   E   +     CCW C  C P   ++ E     C  C  G + T D   C   P  +I  ED   +    I+C+G   M  C+ +  ++K   T +VK+            V  S+C TF  +  P+  IC +R +   +   +    LL K   ++R      N  Q   F       FI    ++++   + VW  +E+ P T+     E  E   L+ ++     +++     I+ ++ +V +         F E KF+ +T    CII +A +    + ++ Y+V    + I+    G+V +GC+   K+
Sbjct:   36 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA--SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKV--GRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRE-LIAAASRANASFTWVASDGWGAQ---ESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHL-----AIDSSNYEQE------SKIMFVVNAVYAMAHALHKMQRTLCP----------NTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM-GRYNV--FNFQNVGGKYSYLKVGHW----AETLSLDVNSIH---WSRNSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYLADE---FTCMDCGSGQWPTADLTGCYDLPEDYIRWEDAWAIGPVTIACLG--FMCTCMVVTVFIKHNNTPLVKASGRELCYILLFGVGLSYCMTFFFIAKPSPVICALRRLGLGSSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVSVWLILEA-PGTRRYTLAEKRETVILKCNVKDSSMLISLTYDVILVILCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGFVVLGCLFAPKV 823

The following BLAST results are available for this feature:

BLAST of TCONS_00021016-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021016-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM3	5.746e-53	23.05	Metabotropic glutamate receptor 3 OS=Homo sapiens ...	[more]

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TCONS_00021016-protein (polypeptide) - C. hemisphaerica