TCONS_00020965-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020965-protein
Unique NameTCONS_00020965-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020965-protein ID=TCONS_00020965-protein|Name=TCONS_00020965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
WDGYPLHYEQKHGWGYLAPMKTQIHHLKTNVLEKEKNTGFPYRVFMEFIK
QRKEDREEDLAKLPLFSQCDDMNGIDIGLPCIRFFKLPHKNGDNFNVGNP
LAKDFLSKIEDGTLSTSGNFNAKLPIELNKMLSFWRNGRKRICTQMAVWL
DDNEKDGAGVILPQIITAGTVTRRAVEPTWLTASNPLRDRIGSELKSMVR
PPPGYSLVGADVDSQELWIASVLGDAQFAQIHGCTALSWMTLQGKKSERT
DLHSKTADTIGMSRDQAKIFNYGRVYGAGESFAVRLLMQFNHNLTQREAE
NTAAKLYESTKGIKRYSARAGNI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011755XLOC_011755Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020965TCONS_00020965Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002297DNA-dir_DNA_pol_A_mt
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR019760DNA-dir_DNA_pol_A_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005760gamma DNA polymerase complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005760 gamma DNA polymerase complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002297DNA-directed DNA-polymerase, family A, mitochondriaPRINTSPR00867DNAPOLGcoord: 169..195
score: 77.78
coord: 271..279
score: 87.3
IPR001098DNA-directed DNA polymerase, family A, palm domainSMARTSM00482polaultra3coord: 192..323
e-value: 9.8E-16
score: 68.3
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 99..318
e-value: 9.1E-29
score: 100.5
NoneNo IPR availableGENE3D1.10.150.20coord: 217..322
e-value: 2.3E-16
score: 59.9
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 51..317
IPR019760DNA-directed DNA polymerase, family A, conserved sitePROSITEPS00447DNA_POLYMERASE_Acoord: 264..283

Blast
[Close]
BLAST of TCONS_00020965-protein vs. Swiss-Prot (Human)
Match: DPOG1 (DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 3.675e-107
Identity = 182/389 (46.79%), Postives = 234/389 (60.15%), Query Frame = 0 
Query:    1 WDGYPLHYEQKHGW-----------------------GYLAPMKTQIHHLKTNVLEKEKNTGFPYRVFM-------------------EFIKQRKEDREEDLAKL-------------PLFSQCDDMNGI----DIGLPCIRFFKLPHKNGDNFNVGNPLAKDFLSKIEDGTLSTS-GNFNAKLPIELNKMLSFWRNGRKRICTQMAVWL-------------DDNEKDGAGVILPQIITAGTVTRRAVEPTWLTASNPLRDRIGSELKSMVRPPPGYSLVGADVDSQELWIASVLGDAQFAQIHGCTALSWMTLQGKKSERTDLHSKTADTIGMSRDQAKIFNYGRVYGAGESFAVRLLMQFNHNLTQREAENTAAKLYESTKGIKRY 316
            WDG+PLHY ++HGW                       G + P +      + + LE+ K    P    +                   ++++   E + E+L                P  +Q    +G     D+ +P   FFKLPHK+G++ NVG+P AKDFL K+EDGTL    G  +    +E+NKM+SFWRN  KRI +QM VWL             D +E+   G ILPQ++TAGT+TRRAVEPTWLTASN   DR+GSELK+MV+ PPGY+LVGADVDSQELWIA+VLGDA FA +HGCTA  WMTLQG+KS  TDLHSKTA T+G+SR+ AKIFNYGR+YGAG+ FA RLLMQFNH LTQ+EA   A ++Y +TKG++ Y
Sbjct:  607 WDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESLYRKHCLEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVDIPGCWFFKLPHKDGNSCNVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWY 995
The following BLAST results are available for this feature:
BLAST of TCONS_00020965-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOG13.675e-10746.79DNA polymerase subunit gamma-1 OS=Homo sapiens GN=... [more]
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