TCONS_00020958-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020958-protein
Unique Name	TCONS_00020958-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	330

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020958-protein ID=TCONS_00020958-protein|Name=TCONS_00020958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MLIKTEKLVHIKKNSRNFINVVREHYLRDDIPCKSSACYQNCVQPKGLPL
LTDEQKTTHYVIPDITCCRKYLEILELKELTNIIFLQSVVQQIKKKAGKR
VSKNITGIHKNPLKSSIVFDNEFHQSCYVQRKEGQDLDEWFWKNVYSTAQ
WFHQHLQQKISIIILTECEEVLKYYGSETPGIFVMSMTDYINGFWPDLNE
AKDLMESLSSINDVEELNIGASICKEFHEYFPNQVLEAGIKSGRFFANYL
KVNKHRPMMEAFIQKGDGKISSSSTSTNNISQVLIHGTAARNRAVDGDSV
VVELLPESQWKSRSTSIHQHSESNCKCVER

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011751	XLOC_011751	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020958	TCONS_00020958	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033771	Rrp44_CSD1
IPR012340	NA-bd_OB-fold

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033771	Rrp44-like cold shock domain	PFAM	PF17216	Rrp44_CSD1	coord: 269..317 e-value: 2.7E-7 score: 30.3
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 226..321

Blast

[Close]

BLAST of TCONS_00020958-protein vs. Swiss-Prot (Human)
Match: DI3L1 (DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 9.950e-79
Identity = 130/325 (40.00%), Postives = 200/325 (61.54%), Query Frame = 0

Query:    1 MLIKTEKLVHIKKNSRNFINVVREHYLRDDIPCKSSACYQNCVQPKGLPLLTDEQKTTHYVIPDITCCRKYLEILELKELTNIIFLQSVVQQIKKKAGKRVSKNITGIHKNPLKSSIVFDNEFHQSCYVQRKEGQDLDEWFWKNVYSTAQWFHQHLQQKISIIILTECEEVLKYYGSETPGIFVMSMTDYINGFWPDLNEAKDLMESLSSINDVEELNIGASICKEFHEYFPNQVLEAGIKSGRFFANYLKVNKHRPMMEAFIQKGDGKISSSSTSTNNISQVLIHGTAARNRAVDGDSVVVELLPESQWKSRSTSIHQHSESNC 325
            ML K EK++ ++      + +VREHYLR  +PC S  C Q         LL+ +   THYVIPD    + YLEILE  EL  IIF+Q+  Q ++ + G+R    +  + K+     I+F NEF Q CY+ R+ G+ +++W  +++Y+ A W++ H Q ++ I+++TE EE ++ YGSET G+FV++  +Y++ FWPDL  A +L +S+       E     S  KE+ E+ P +VLEAGIKSGR+    L VNKHR  +EAF++       +SS  ++ +S +LIHG  ARNR++ GD VVVELLP+++WK R+ ++    E++C
Sbjct:    1 MLQKREKVLLLRTFQGRTLRIVREHYLRPCVPCHSPLCPQPAACSHDGKLLSSD--VTHYVIPDWKVVQDYLEILEFPELKGIIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCILFANEFQQCCYLPRERGESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDEEAIQQYGSETEGVFVITFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLQ----GASSKDSDLVSDILIHGMKARNRSIHGDVVVVELLPKNEWKGRTVAL---CENDC 316

The following BLAST results are available for this feature:

BLAST of TCONS_00020958-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020958-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DI3L1	9.950e-79	40.00	DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L P...	[more]

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TCONS_00020958-protein (polypeptide) - C. hemisphaerica