TCONS_00020949-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020949-protein
Unique NameTCONS_00020949-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020949-protein ID=TCONS_00020949-protein|Name=TCONS_00020949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
TFVPNFKSIPFLDQKLCKAGGKHPPLRIQNLKKPDNNRVKPNDGNSFAWK
ECELDINHGDIAALCQKFMGEIVSEWGEWAPCSRECKRGTQTRSRICYDQ
TLFDEDDNSCGGELLTDEQECLVRENCQGSGYYLAEVQQSCDEFCASKEL
GCSTEIETGDSANAFADVLLPYTIDSTRSEWQKTYSPGCLVGDVCVEFEG
VPNEVKCDEKPEENNFRRFCHCVNATDIGFGPWSPWSECSTTCNGTRNRQ
RECFGFCDGPTDELENCGTPYCPIHGGLSEWSQWSNCDATCGGGTTTRTR
NCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNT
GHYVRRRTCNPANYGGNLECPGSNDEKQPCNVEVXMQSGELWWKSGMPGF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011746XLOC_011746Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020949TCONS_00020949Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 230..273
e-value: 3.1E-6
score: 36.7
coord: 73..128
e-value: 1.8E-6
score: 37.5
coord: 278..330
e-value: 2.4E-12
score: 57.0
coord: 335..387
e-value: 9.0E-9
score: 45.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 275..329
e-value: 5.5E-15
score: 54.9
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 279..329
e-value: 3.7E-11
score: 43.0
coord: 231..272
e-value: 5.3E-7
score: 29.6
coord: 74..127
e-value: 1.8E-6
score: 27.9
coord: 337..382
e-value: 6.5E-9
score: 35.8
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 227..273
score: 10.727
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 275..330
score: 12.817
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 70..128
score: 10.933
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 332..384
score: 10.805
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 331..382
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 226..272
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 274..324
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 71..124
NoneNo IPR availableGENE3D2.30.90.10coord: 334..380
e-value: 2.6E-11
score: 43.4
coord: 229..274
e-value: 1.6E-7
score: 31.2
coord: 72..121
e-value: 5.0E-10
score: 39.3

Blast
BLAST of TCONS_00020949-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.376e-30
Identity = 67/162 (41.36%), Postives = 84/162 (51.85%), Query Frame = 0
Query:  233 WSPWSECSTTC-NGTRNRQREC------FG--FCDGPTDELENCGTPYCPIHGGLSEWSQWSNCDATCGGGTTTRTRNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNLECPGSNDEKQPCNVEV 384
            W PW  CS +C  GT+ R R C      FG  +CDG   +++ C    CPIHG  + W+ WS C  +CGGG   RTR C  P PQ+ G  C GS V SD C    CP    W+ WS W +C + CN G   R RTC NP    G   C G + + Q CN ++
Sbjct: 4649 WQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM 4810          

HSP 2 Score: 113.235 bits (282), Expect = 6.266e-27
Identity = 64/164 (39.02%), Postives = 79/164 (48.17%), Query Frame = 0
Query:  229 GFGPWSPWSECSTTC-NGTRNRQRECF--------GFCDGPTDELENCGTPYCPIHGGLSEWSQWSNCDATCGGGTTTRTRNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTCN--PANYGGNLECPGSNDEKQPCN 381
            GF  WS W  CS TC  G + R R C           C G   E+ NC    CP+ G  SEWS W  C  +CG G  TRTR C+ P  QH G  C G+ V+   C +  CPV   W+ W  W +C + C  G   R R CN  P  +GG+  C G+  + Q CN
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSY-CDGAETQMQVCN 4693          

HSP 3 Score: 103.605 bits (257), Expect = 1.128e-23
Identity = 60/161 (37.27%), Postives = 72/161 (44.72%), Query Frame = 0
Query:  233 WSPWSECSTTCNG-TRNRQREC------FG--FCDGPTDELENCGTPYCPIHGGLSEWSQWSNCDATCGGGTTTRTRNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNLECPGSNDEKQPCNVE 383
            W+ WS CS +C G  R R R C      +G   C+G   + + C +  CP HG  S WS W  C  TC GG   R R CD P P + G  C G       C    CPVD  W  W  WS C   C  G   R+R C +P    G   CPG   +   CNV+
Sbjct: 4706 WASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQ 4866          

HSP 4 Score: 98.9821 bits (245), Expect = 3.568e-22
Identity = 57/159 (35.85%), Postives = 75/159 (47.17%), Query Frame = 0
Query:  233 WSPWSECSTTC-NGTRNRQRECFGF--------CDGPTDELENCGTPYCPIHGGLSEWSQWSNCDATCGGGTTTRTRNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNLECPGSNDEKQPCN 381
            WS W EC+ +C  G + R R C           C+G   E+  C    CP+HG  S W  W  C  +CG GT TR R C+ P P   G+ C G+      C   NCP+  +WA W+ WS+C   C  G   R R C +P    G  +C GS+ +   CN
Sbjct: 4592 WSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCN 4750          

HSP 5 Score: 95.1301 bits (235), Expect = 6.560e-21
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 0
Query:  274 IHGGLSEWSQWSNCDATCGGGTTTRTRNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNLECPGSNDEKQPCNVE 383
            +HGG S+WS W  C  TCG G   R+R C+ P P + G  C GS ++  +C    CPVD  W+EWS+W  C + C  G+  R RTC NP+   G   C G+  E   CN+ 
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR 4638          

HSP 6 Score: 83.9593 bits (206), Expect = 2.898e-17
Identity = 48/118 (40.68%), Postives = 55/118 (46.61%), Query Frame = 0
Query:  232 PWSPWSECSTTCNGTRNRQ-RECFG--------FCDGPTDELENCGTPYCPIHGGLSEWSQWSNCDATCGGGTTTRTRNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSV 340
            PWS W  CS TCNG + R+ R C           C GP  +++ C T  CP+ G    W  WS C A+CGGG  TR R CD P P   G  C G       C V  CP   Q A  SV
Sbjct: 4762 PWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGPQRARGSV 4879          
The following BLAST results are available for this feature:
BLAST of TCONS_00020949-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.376e-3041.36Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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