TCONS_00020675-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020675-protein
Unique NameTCONS_00020675-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1069

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020675-protein ID=TCONS_00020675-protein|Name=TCONS_00020675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1069bp
MVNVDICGIDVDFPFEPYDCQKKYMEKVIQCLQKGFNGVLESPTGTGKTL
CLLCATLAWRETYAARLQLERVGTIKNKAFEQELGSLLNDAAGGLNPEGS
WTRGFADIPKIIYASRTHSQISQAVSELKNTRYTPKICVLGSRDQMCINS
EVMKEENHNGKVHMCRSKVSNKTCFYYNNIEASKTVIPNEIMDIEDLVNL
GNEKRFCPYYMSRELRKEADLIFMPYNYVLDFKARSAHSIDLTNTIILLD
EAHNVEGVCESNASFDLTSFDLASCIEDCQQCVELLMQAEEDNTVLDEAS
VTDLTAEDASHMKSIFLKIETMILNVPLKDGSATKSATFLFDELSKLKVN
EQSKDQILDSLDKITGVLTGTKSKAFKGKNYALDKFGTVLRTMFSRSTDA
DISKSNNDLSTTRKFYKVHIQVEKKKEEKSKQKTVNVWTSSKYTTGSDSA
RTLSYWCFNPGLTMRDLMDQGVRSLILTSGTLSPIPSFKYELQVPFNVEL
ENDHVIKQHQVFVGIIPQGPDGKKLNSSYKFRSTPEYQLSLGNTVVNLSR
IIPHGLLVFFPSYPVMDMVIAKWQEAGIWNRLSQSKGLFIEPRRKQGLSD
TMEEFYQKVQDPSLKGAIFFAVCRGKVSEGLDFADSNGRGVIITGLPFPP
SHDPKVVLKMQYLDEQKEGVCIKGREWYKQQASRAVNQAIGRVIRHRNDY
GAILLCDERFKYADSKAHLPTWIKKQIREYKDFGQAQRDLVFFFKDIPSK
MGLLEPCGKQKRKHDDIQTASGNTDNCGNNDDCCMNQKPKLPRFNKSTNN
TSNSFFGNLPNKAGQHQGSASTSLMLLSDQKEGKSSIFDSLNTTSTTNNN
NRAVTANKNNTYFSTLQTSSTNLSTGATTNSTVVKTKKYKIVGNKPKDGA
SKVTKTTSVTVPETVTDAKQYLRKVKTVLDHGRYEKFGHALKLYKESGNI
KILLDKLKDLLDRENLEHVSILKGFSCFVRKENDKKMFVETCKNFTGAQC
VICLKEAYRPYTIATCSHMACYPCWYALKKEEELSCPKCGVEFSWKNLQK
CFMEGQVGLYGVDITQFKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011598XLOC_011598Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020675TCONS_00020675Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006554Helicase-like_DEXD_c2
IPR006555ATP-dep_Helicase_C
IPR013083Znf_RING/FYVE/PHD
IPR013020DNA_helicase_DNA-repair_Rad3
IPR010614DEAD_2
IPR001841Znf_RING
IPR030845RTEL1
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0004003ATP-dependent DNA helicase activity
GO:0003676nucleic acid binding
GO:0008026ATP-dependent helicase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0000723telomere maintenance
GO:0006281DNA repair
GO:0006260DNA replication
GO:0006310DNA recombination
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0000723 telomere maintenance
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0004003 ATP-dependent DNA helicase activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006554Helicase-like, DEXD box c2 typeSMARTSM00488deadxpdcoord: 9..293
e-value: 1.5E-60
score: 217.2
IPR006555ATP-dependent helicase, C-terminalSMARTSM00491Cxpdneu3coord: 563..712
e-value: 1.4E-58
score: 210.6
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 546..725
e-value: 4.4E-57
score: 192.9
NoneNo IPR availableGENE3D3.40.50.300coord: 463..741
e-value: 5.7E-4
score: 18.8
NoneNo IPR availableGENE3D1.20.1160.11coord: 909..981
e-value: 8.8E-4
score: 18.7
NoneNo IPR availableGENE3D3.40.50.300coord: 10..377
e-value: 2.3E-28
score: 98.4
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 999..1051
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 982..1058
e-value: 5.3E-9
score: 35.2
IPR013020DNA helicase (DNA repair), Rad3 typeTIGRFAMTIGR00604TIGR00604coord: 12..737
e-value: 3.0E-151
score: 503.4
IPR010614DEAD2PFAMPF06733DEAD_2coord: 113..270
e-value: 8.2E-51
score: 172.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 1000..1039
score: 9.981
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 999..1043
e-value: 1.56392E-6
score: 45.5144
IPR030845Regulator of telomere elongation helicase 1HAMAPMF_03065RTEL1coord: 1..998
score: 13.403
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 7..308
score: 27.576
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 28..62
coord: 201..275
coord: 106..129
coord: 471..485
coord: 520..704
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..66
coord: 110..146
coord: 214..256

Blast
[Close]
BLAST of TCONS_00020675-protein vs. Swiss-Prot (Human)
Match: RTEL1 (Regulator of telomere elongation helicase 1 OS=Homo sapiens GN=RTEL1 PE=1 SV=2)

HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0
Identity = 356/765 (46.54%), Postives = 506/765 (66.14%), Query Frame = 0 
Query:    1 MVNVDICGIDVDFPFEPYDCQKKYMEKVIQCLQKGFNGVLESPTGTGKTLCLLCATLAWRETYAARLQLERVGTIKNKAFEQELGSLLNDAA-----GGLNPEGSWTRGFADIPKIIYASRTHSQISQAVSELKNTRYTPKICVLGSRDQMCINSEVMKEENHNGKVHMCRSKVSNKTCFYYNNIE--ASKTVIPNEIMDIEDLVNLGNEKRFCPYYMSRELRKEADLIFMPYNYVLDFKARSAHSIDLTNTIILLDEAHNVEGVCESNASFDLTSFDLASCIEDCQQCVELLMQAEEDNTVLDEASV------TDLTAEDASHMKSIFLKIETMI--LNVPLKDGSATKSATFLFDELSKLKVNEQSKDQILDSLDKITGVLTGTKSKAFKGKNYALDKFGTVLRTMFSRSTDADISKSNNDLSTTRKFYKVHIQVEKKKEEKSKQKTVNVWTSSKYTTGSDSARTLSYWCFNPGLTMRDLMDQGVRSLILTSGTLSPIPSFKYELQVPFNVELENDHVIKQHQVFVGIIPQGPDGKKLNSSYKFRSTPEYQLSLGNTVVNLSRIIPHGLLVFFPSYPVMDMVIAKWQEAGIWNRLSQSKGLFIEPRRKQGLSDTMEEFYQKVQDPSLKGAIFFAVCRGKVSEGLDFADSNGRGVIITGLPFPPSHDPKVVLKMQYLDEQK-----EGVCIKGREWYKQQASRAVNQAIGRVIRHRNDYGAILLCDERFKYADSKAHLPTWIKKQIREYKDFGQAQRDLVFFFK 745
            M  + + G+ VDFPF+PY CQ++YM KV++CLQ+  NG+LESPTGTGKTLCLLC TLAWRE         R G    K  E+  G L  D A           G     + DIPKIIYASRTHSQ++Q ++EL+NT Y PK+CVLGSR+Q+CI+ EV K+E+++ ++H+CR KV++++C +YNN+E  + +  + + I+DIEDLV  G++ R CPYY+SR L+++AD+IFMPYNY+LD K+R AH+IDL  T+++ DEAHNVE +CE +ASFDLT  DLAS ++   Q +E   +A +      E S        ++  ED + +K I L++E  I  + +P  D   TK  +++F+  ++ ++  Q+K  ILDSLD+I   L G ++  F      L K   +++ +FS         S   L   +  YKVHI  +      +++   + W++   T      + LSYWCF+PG +M +L+ QGVRSLILTSGTL+P+ SF  E+Q+PF V LEN H+I +HQ++VG++P+GPDG +L+S++  R + E   SLG  + N++R++P+GLL+FFPSYPVM+  +  W+   +  ++   K LF+EPR K   S+T+  +Y +V  P   GA F AVCRGK SEGLDF+D+NGRGVI+TGLP+PP  DP+VVLKMQ+LDE K      G  + G+EWY+QQASRAVNQAIGRVIRHR DYGA+ LCD RF +AD++A LP+W++  +R Y +FG   RD+  FF+
Sbjct:    1 MPKIVLNGVTVDFPFQPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHL-------RDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVINELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAAQQGEPHPEFSADSPSPGLNMELEDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQITFQTKGCILDSLDQIIQHLAG-RAGVFT-NTAGLQKLADIIQIVFSVDPSEGSPGSPAGLGALQS-YKVHIHPDAGHRRTAQRS--DAWST---TAARKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHVRVYDNFGHVIRDVAQFFR 750
The following BLAST results are available for this feature:
BLAST of TCONS_00020675-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTEL10.000e+046.54Regulator of telomere elongation helicase 1 OS=Hom... [more]
back to top