TCONS_00020608-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020608-protein
Unique NameTCONS_00020608-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020608-protein ID=TCONS_00020608-protein|Name=TCONS_00020608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MKNIEYVAILFNLLLSYYVDGKVLIFNNVSSLTGMYRDAQADFGREIPQT
GIVGLLDLAKPLNACTPLKNSFPYRQYVYGNIFLLAEESTSQTTCSYEQQ
AQNAQNAGYAAIIVYRRNGYEDLVTMDGEGPAIVSVMVTRDAGDSLKQSL
YPTRSRIKITAEIELPFQLYLIPFVVVISICFFFMLLFSLGRYCRFRIRE
RRSRLSPANLKKIPTKKYTKEDDYDCCAICIEDYEENDKIRILPCNHAYH
CKCVDPWLTSGKKVCPVCKQSVETKKKKKKKKKKKRNSSRSLDRASTSSA
PPSEGDGEETSADEGGEYDTNERTPLLSSTDNARPSGAIDV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011570XLOC_011570Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020608TCONS_00020608Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR003137PA_domain
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 227..268
e-value: 1.4E-7
score: 41.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 226..269
e-value: 6.6E-11
score: 42.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 227..269
score: 12.858
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 226..272
e-value: 1.02133E-13
score: 63.6188
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 209..298
e-value: 5.9E-19
score: 67.0
NoneNo IPR availableGENE3D3.50.30.30coord: 19..162
e-value: 5.3E-13
score: 48.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 276..341
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 209..275
IPR003137PA domainPFAMPF02225PAcoord: 75..146
e-value: 4.5E-7
score: 29.8

Blast
[Close]
BLAST of TCONS_00020608-protein vs. Swiss-Prot (Human)
Match: RNF13 (E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.255e-55
Identity = 103/270 (38.15%), Postives = 154/270 (57.04%), Query Frame = 0 
Query:   10 LFNLLLSYYVDGKVLIFNNVSSLTGMYRDAQADFGREIPQTGIVGLLDLAKPLNACTPLKNSFPYRQYVYGNIFLLAEESTSQTTCSYEQQAQNAQNAGYAAIIVYRRNGYEDLVTMDGEGPAIV------SVMVTRDAGDSLKQSL-YPTRSRIKITAEIELPFQLYLIPFVVVISICFFFMLLFSLGRYCRFRIRERRSRLSPANLKKIPTKKYTKEDDYDCCAICIEDYEENDKIRILPCNHAYHCKCVDPWLTSGKKVCPVCKQSV 272
            LF  L    V+  +L +N   + +  + D  A FG  +P  G+ G L  +KP NAC P+    P +    G   +L      +  C+++ +  NAQ AGY A IV+  +  +DL++M      ++      SV +   + +SLK    Y     + +  E  LP + YLIPF++++ IC   +++F + ++ + R R RR+RL    LKK+P  K+ K D+YD CAIC+++YE+ DK+RILPC+HAYHCKCVDPWLT  KK CPVCKQ V
Sbjct:   23 LFAFLNLLPVEADILAYN-FENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPP-PVKDNSSGTFIVL----IRRLDCNFDIKVLNAQRAGYKAAIVHNVDS-DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
The following BLAST results are available for this feature:
BLAST of TCONS_00020608-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF131.255e-5538.15E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens ... [more]
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