TCONS_00020604-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020604-protein
Unique Name	TCONS_00020604-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	629

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020604-protein ID=TCONS_00020604-protein|Name=TCONS_00020604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=629bp
FYCGCVHMVDIKAMDYVDLDPMSPDELKQVCKKYRQKKTGEGGGGAIDGD
PINYELDETGDEVNEDDLVSTNGSTEQLNKLDPDEGASDINNHSSGANSY
NVSTHASDVAADLPSEDAERHPVIPTEQTNGETGAEETLIGTIPSPTEPS
FEATEDGRHSPKKTSSVSNFLNGNMGQDEAREKIKNAFKHGIPNLGTRSL
SKASDLFRKKKKGKNRSHRHQHSVHLTVPNDGGETTTDFEEGDSDASTDN
RLDEDILCPCHDSHTGTEYTNEEFDMDVDTLYTHLFAQDSELMKRVFEER
KHENWRYTALEDAGDHQTQTLTYTLNLNYSIGPKTSETVSKMVFPKDNKP
GSYYVITTENRSYGVPYSDSFHASVRYCITRAVGNRSRLKVHGDIVYTKR
VFGLVKNMISRNGDEAMRSYYVYLAEVLKTESESTPIATNPIGIDRQKRK
SKKKVLTKKVSKEPGKNIESQRKSSLHTPKPPIPASQQENNNIFTQSALS
STALITLSVIIFLLLGTNLYILRRLGSLEGNMVVRSRGWTPKELPTSKEE
WKTLLEYQKNLHDIELIKLKEVIGNTALLIKQVEGSISALYSEVDKSVAS
SYDKLSEGLENLQQQQQGSNEPGEGKVEL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011569	XLOC_011569	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020604	TCONS_00020604	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR031968	VASt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031968	VASt domain	PFAM	PF16016	DUF4782	coord: 270..412 e-value: 1.3E-28 score: 100.2
IPR031968	VASt domain	PROSITE	PS51778	VAST	coord: 265..436 score: 33.594
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 438..488

Blast

[Close]

BLAST of TCONS_00020604-protein vs. Swiss-Prot (Human)
Match: GRM1B (GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.603e-31
Identity = 103/357 (28.85%), Postives = 168/357 (47.06%), Query Frame = 0

Query:  265 TGTEYTNEEFDMDVDTLYTHLFAQDSELMKRVFEERKHEN-----WRYTALEDAGDHQTQTLTYTLNLNYSIGPKTSETVSKMVFPKDNKPGSYYVITTENRSYGVPYSDSFHASVRYCITRAVGNRSRLKVHGDIVYTKRVFGLVKNMISRNGDEAMRSYYVYL-AEVLKTESESTPIATNPIGIDRQKRKSK-KKVLTKKVSKEPGKNIESQRKSSLHTPKPP------------IPASQQENN------NIFTQSALSSTALITLSVIIF---LLLGTNLYILRRLGSLE--GNMVVRSRGWTPKE-LPTSKEEWKTLLEYQKNLHDIELIKLKEVIGNTALLIKQVEGSISAL 590
            +G +Y NE F+  VD LY  LF  +S   +   E+R+  +     W+    ++   +Q++ + YT+ L   + PKT+         K ++    YVI  E  ++ VPY D F+   RY +TR   N+SRL+V  ++ Y K+ +GLVK  I +N    +  Y+ +L +E+ KTES      T    + RQ  K K  K  T +  K P  ++       + +P               +  S Q  +      N F   ++S   L+   VI F   LL+  N+ +  +L  LE     +   +G   +E LP S+ EW  LLE Q+  HD EL K +E+I ++ +L+ Q++ S+  L
Sbjct:  372 SGRQYVNEVFNFSVDKLYDLLFT-NSPFQRDFMEQRRFSDIIFHPWK----KEENGNQSRVILYTITLTNPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSRLRVSTELRYRKQPWGLVKTFIEKNFWSGLEDYFRHLESELAKTES------TYLAEMHRQSPKEKASKTTTVRRRKRPHAHLRVPHLEEVMSPVTTPTDEDVGHRIKHVAGSTQTRHIPEDTPNGFHLQSVSKLLLVISCVICFSLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREIIKSSVMLLDQMKDSLINL 717

The following BLAST results are available for this feature:

BLAST of TCONS_00020604-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020604-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM1B	7.603e-31	28.85	GRAM domain-containing protein 1B OS=Homo sapiens ...	[more]

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TCONS_00020604-protein (polypeptide) - C. hemisphaerica