TCONS_00020561-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020561-protein
Unique Name	TCONS_00020561-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	453

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020561-protein ID=TCONS_00020561-protein|Name=TCONS_00020561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
MATTTPFTPFPPATTPNNSTGVISPQLLHFLNTGQLLKNMSPELYNEFMR
LLRNQNMTLQDVASIQSESPSIPTLNLSTTFSNMAAIFFIMIIIISVSCN
TLLIYIIVKVKSLHTIMHVFIINLAISDLITSAATMPFDVDLMLTGSFNH
SKIACGFMHFTFLISLPSSVLNLVLLTTERFISVVFPFQRIRYLKKRNVI
IMLITTWVYTFSVALYPLIYKPGPQIVFGRCVLIYPIAYDIFNVVTNFSL
PVIYICFANFVLFFIANRHAIRIKTLTMGSFVRKSKTPDNNNRKDERKQS
DESIESVDENKKSPGSRSTTQNKRRGSKGISRKLSIHTITMNVNMRAVKK
LALLVGVFLFCWLTYIIIVAKNLSCQMCVARELVWIGNIINYSSSAVNPV
LYGLMNSTIRREIKKPFRQLYEKYFSPIKTRSETLNRRRSTFISAISEDQ
TEV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011540	XLOC_011540	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020561	TCONS_00020561	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 198..219 score: 17.63 coord: 240..263 score: 17.18 coord: 117..138 score: 31.61 coord: 347..371 score: 26.97 coord: 84..108 score: 19.1 coord: 162..184 score: 24.0 coord: 384..410 score: 25.93
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 93..417 e-value: 4.0E-4 score: -48.8
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 100..402 e-value: 2.2E-37 score: 128.7
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 168..184
None	No IPR available	GENE3D	1.20.1070.10		coord: 51..453 e-value: 1.7E-57 score: 194.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..329
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 343..432 coord: 72..274
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 99..402 score: 32.348

Blast

[Close]

BLAST of TCONS_00020561-protein vs. Swiss-Prot (Human)
Match: ADA1D (Alpha-1D adrenergic receptor OS=Homo sapiens GN=ADRA1D PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.276e-23
Identity = 80/340 (23.53%), Postives = 155/340 (45.59%), Query Frame = 0

Query:   86 AIFFIMIIIISVSCNTLLIYIIVKVKSLHTIMHVFIINLAISDLITSAATMPFDVDLMLTGSFNHSKIACGFMHFTFLISLPSSVLNLVLLTTERFISVVFPFQRIRYLKKRNVIIMLITTWVYTFSVALYPLIYKPGPQIVFGR-CVLIYPIAYDIFNVVTNFSLPVIYICFANFVLFFIANRHAIRIKTLTMGSFVRKSKTPDNNNRKDERKQSDESIESVDENKKSPGSRSTTQNKRRGSKG--ISRKLSIHTITMNVNMRAVKKLALLVGVFLFCWLTYIIIVA-----KNLSCQMCVARELVWIGNIINYSSSAVNPVLYGLMNSTIRREIKKPF 417
             +F    I+++V+ N L+I  +   + L T+ + FI+NLA++DL+ SA  +PF   + + G +   +  C       ++   +S+L+L  ++ +R++ V    +    + +R    +L   WV    V++ PL+    P     R C +     Y +F+ V +F LP+  I      ++ +A     R  T ++ + V++           ER ++ E +  +     + G+     +  R +KG      LS+  +  +   +A K LA++VGVF+ CW  +  ++        L     V + + W+G    Y +S VNP++Y   +    RE K+ F
Sbjct:  100 GVFLAAFILMAVAGNLLVILSVACNRHLQTVTNYFIVNLAVADLLLSATVLPFSATMEVLGFWAFGRAFCDVWAAVDVLCCTASILSLCTISVDRYVGVRHSLKYPAIMTERKAAAILALLWVVALVVSVGPLLGWKEPVPPDERFCGITEEAGYAVFSSVCSFYLPMAVIVVMYCRVYVVA-----RSTTRSLEAGVKR-----------ERGKASEVVLRIHCRGAATGADGA--HGMRSAKGHTFRSSLSVRLLKFSREKKAAKTLAIVVGVFVLCWFPFFFVLPLGSLFPQLKPSEGVFKVIFWLG----YFNSCVNPLIYPCSS----REFKRAF 413

The following BLAST results are available for this feature:

BLAST of TCONS_00020561-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020561-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADA1D	3.276e-23	23.53	Alpha-1D adrenergic receptor OS=Homo sapiens GN=AD...	[more]

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TCONS_00020561-protein (polypeptide) - C. hemisphaerica