TCONS_00020518-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020518-protein
Unique Name	TCONS_00020518-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	950

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020518-protein ID=TCONS_00020518-protein|Name=TCONS_00020518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp
MLLCQEHSQTKLVYVYNLIGNXYKDGFSMRCIGTAIFIYLLLLGVISTIG
ENETGSTGGLIGTREHILALCISGLVFTVFSGQPLLVLSFALPLSLFDGL
LYNVCSDYNIDFLSFRMLIGLWAVVFLAIFVAVNLSSYLKFFTRFSLEIF
VIVPALVLLCYGFVHMCYMIQLYAALPGTFSNQTCLCVQSYREPLNMSIP
INNYTLPTNGTTIQTTVNTLNTTFNSTAVVTNTTFLTTPLTTVAMTTIRQ
QYRVKQKILHNIHFRDCIKKDMSLVGEACMHGVYPFTSILTVSSIVLFLF
LTSFQHLGYLPKQVHQFFQNFAALIVVIALSASANQFNINIRYLSIPKSF
APNGIERTQWIVDPLVSNEAWIIVLAVIPAFILALMIFVEQQLSARQINN
HYALLKKGHGYHLDLAVVCVGLFISSVFGLPFCVASIILSINNVYSLTTK
SQADFIGCDTKIKEQRLSNLLTYVLITLTPTMRPILRYIPFPVLYGLLIV
ALFKTFAGTQFSERFTLLFMPKEKQPDIRYLRQVPLISVNIFTLSQVVLT
VLLCVARGTLAVMVFPIVTILLIVMRALMERILPMRDILALDEPLPSFRC
ILRMCRKPRTELLKPESIEKGALLADESHEDVLPDINKDLDRVNISEELS
KTAAWKQLTFAENNSPISNASPGDAVDGKKRRRKRSRTTKPGPNVGKDSP
QSNPKSPPVENNELIEMNGHTIGLPIEDIEHRLQPWMTAKGVEEEETVNG
RLSRQGSSDRAPPPHLTRQGTVDESQSNRSHSKHVSRQGSENKDSFKRQR
SKDRGSLKNSSGKRHDSKRSHNKQEGRRNSSHKAPKIHHKPIVPLEETAL
PPWEQPYHSPPRKDFGLLHIPTDDSMVPDVDPACSVAQSSADNNSNSENV
SQNETNETKTTLDDTISPIVTDRKDSILSDSPRHSNVGGDESGDASAELD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011513	XLOC_011513	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020518	TCONS_00020518	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011531	HCO3_transpt_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006820	anion transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006820	anion transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011531	Bicarbonate transporter, C-terminal	PFAM	PF00955	HCO3_cotransp	coord: 23..544 e-value: 4.5E-104 score: 349.0

Blast

[Close]

BLAST of TCONS_00020518-protein vs. Swiss-Prot (Human)
Match: S4A10 (Sodium-driven chloride bicarbonate exchanger OS=Homo sapiens GN=SLC4A10 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.095e-89
Identity = 199/663 (30.02%), Postives = 325/663 (49.02%), Query Frame = 0

Query:   23 YKDGFSMRCIGTAIFIYLLLLGVISTIGENETGSTGGLIGTREHILALCISGLVFTVFSGQPLLVLSFALPLSLFDGLLYNVCSDYNIDFLSFRMLIGLWAVVFLAIFVAVNLSSYLKFFTRFSLEIFVIVPALVLLCYGFVHMCYMIQLYAALPGTFSNQ-------TCLCVQSYREPLNMSIPINNYTLPTNGTTIQTTVNTLNTTFNSTAVVTNTTFLTTPLTTVAMTTIRQQYRVKQKILHNIHFRDCIKKDMSLVGEACMHG------VYPFTSILTVSSIVLFLFLTSFQHLGYLPKQVHQFFQNFAALIVVIALSASANQFNINIRYLSIPKSFAPNGIERTQWIVDPLVSNEAWIIVLAVIPAFILALMIFVEQQLSARQINNHYALLKKGHGYHLDLAVVCVGLFISSVFGLPFCVASIILSINNVYSLTTKSQADFIGCDTK---IKEQRLSNLLTYVLITLTPTMRPILRYIPFPVLYGLLIVALFKTFAGTQFSERFTLLFMPKEKQPDIRYLRQVPLISVNIFTLSQVVLTVLLCVARGTLAVMVFPIVTILLIVMRALMERILPMRDILALDEPLPSFRCILRMCRKPRTELLKPESIEKGALLADESHEDV-LP---DINKDLDRVNISEELSKTAAWKQLTFAENNS 665
            ++D FS++C+ + +F+Y   +  + T G     +T G I   E +    ++G+ +++F GQPL +L    P+ +F+ +L+  C +Y + +LS R  IGLW      I VA + SS + + TRF+ E F    +L+ + + +  +  + +L  A P    N        +C CV    EP N          P+NGT  +   + ++ +                                  I  N+   +C       VG AC H       V  ++ IL  S++ L   L  F+   Y P +V     +FA  + ++ +        I    L +P  F P   +R  W V PL  N  W ++ A+IPA +  ++IF++QQ++A  IN     LKKG GYHLDL +V V L + S+ GLP+ VA+ +LSI +V SL  +S+    G   K   I+EQR++ L+ ++L+  +  M  IL++IP PVLYG+ +     +  G QF +R  L +MP + QPD  YLR VPL  V++FT+ Q+    LL + + + A +VFP++ + L+ +R LM+ +   R++  LD+ +P  +         + +L   E  E+ ++LA E    V LP       D   +NIS+E+SKTA W+ L    +NS
Sbjct:  501 FRDAFSLQCLASFLFLYCACMSPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFGGQPLTILGSTGPVLVFEKILFKFCKEYGLSYLSLRASIGLWTATLCIILVATDASSLVCYITRFTEEAFA---SLICIIFIYEALEKLFELSEAYPINMHNDLELLTQYSCNCV----EPHN----------PSNGTLKEWRESNISAS--------------------------------DIIWENLTVSECKSLHGEYVGRACGHDHPYVPDVLFWSVILFFSTVTLSATLKQFKTSRYFPTKVRSIVSDFAVFLTILCMVLIDYAIGIPSPKLQVPSVFKPTRDDRG-WFVTPLGPNPWWTVIAAIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLDLLMVAVMLGVCSIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLMIFILMGSSVFMTSILKFIPMPVLYGVFLYMGASSLKGIQFFDRIKLFWMPAKHQPDFIYLRHVPLRKVHLFTIIQMSCLGLLWIIKVSRAAIVFPMMVLALVFVRKLMDLLFTKRELSWLDDLMPESK---------KKKLEDAEKEEEQSMLAMEDEGTVQLPLEGHYRDDPSVINISDEMSKTALWRNLLITADNS 1104

The following BLAST results are available for this feature:

BLAST of TCONS_00020518-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020518-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S4A10	8.095e-89	30.02	Sodium-driven chloride bicarbonate exchanger OS=Ho...	[more]

You are here

TCONS_00020518-protein (polypeptide) - C. hemisphaerica