TCONS_00020420-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020420-protein
Unique Name	TCONS_00020420-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	271

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020420-protein ID=TCONS_00020420-protein|Name=TCONS_00020420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MECKQWKKVLYEDQGFPTNYTDDTFLESMKKNVNTRMHDLRTVIFESGIV
SQQLASICILVCVFINLENSRLDPETLILLVSCLLLVGFLVHHLLYQLHP
DISSFLVVSILIFGFSPILKTLMKTISTDTIYAMTVFMFMCNMLFHDYGV
DVAIVSKAISLNAGVFGAVCLSSRLQTTIHVYACVYFAVMLFAILPEVRK
AVKKFHRKAYILQTEGMVLLAISMLNSINQAGALALFISHVAITFLFPLW
MIRLQALKNNIYGPWDEAMIE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011472	XLOC_011472	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020420	TCONS_00020420	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009450	Plno_GlcNAc_GPI2

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0017176	phosphatidylinositol N-acetylglucosaminyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006506	GPI anchor biosynthetic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0017176	phosphatidylinositol N-acetylglucosaminyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009450	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C	PIRSF	PIRSF016104	PIG-C	coord: 1..271 e-value: 5.0E-76 score: 253.5
IPR009450	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C	PFAM	PF06432	GPI2	coord: 6..266 e-value: 1.9E-69 score: 234.1

Blast

[Close]

BLAST of TCONS_00020420-protein vs. Swiss-Prot (Human)
Match: PIGC (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Homo sapiens GN=PIGC PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 9.166e-69
Identity = 110/277 (39.71%), Postives = 170/277 (61.37%), Query Frame = 0

Query:    5 QWKKVLYEDQGFPTNYTDDTFLESMKKNVNTRMHDLRTVIFESGIVSQQLASICILVCVFINLENSRLDPETLILLVSCLLLVGFLVHHLL----------YQLHPDISSFLVVSILIFGFSPILKTLMKTISTDTIYAMTVFMFMCNMLFHDYGVDVAIVSKAISLNAGVFGAVCLSSRLQTTIHVYACVYFAVMLFAILPEVRKAVKKFHRKAYILQTEGMVLLAISMLNSINQAGALALFISHVAITFLFPLWMIRLQALKNNIYGPWDEAMIE 271
            +W+KVLYE Q FP NY D  FLE ++KN++ R +    V+FES +V QQL S+C+ V ++  ++   L P  L+       L+G+++  L+               D+ S LV     +GFSP+LKTL +++STDTIYAM+VFM + +++F DYG + AIVS  +SLN  +F +VCL+SRL  ++H +  V FA+ +FA+ P ++K +K    ++Y+  T      A+  L SI+  GA+   +  ++I+ L P ++IRLQ  K NI+GPWDEA I+
Sbjct:   13 KWQKVLYERQPFPDNYVDRRFLEELRKNIHARKYQYWAVVFESSVVIQQLCSVCVFVVIWWYMDEGLLAPHWLLGTGLASSLIGYVLFDLIDGGEGRKKSGQTRWADLKSALVFITFTYGFSPVLKTLTESVSTDTIYAMSVFMLLGHLIFFDYGANAAIVSSTLSLNMAIFASVCLASRLPRSLHAFIMVTFAIQIFALWPMLQKKLKACTPRSYVGVTLLFAFSAVGGLLSISAVGAVLFALLLMSISCLCPFYLIRLQLFKENIHGPWDEAEIK 289

The following BLAST results are available for this feature:

BLAST of TCONS_00020420-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020420-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PIGC	9.166e-69	39.71	Phosphatidylinositol N-acetylglucosaminyltransfera...	[more]

You are here

TCONS_00020420-protein (polypeptide) - C. hemisphaerica