TCONS_00020309-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020309-protein
Unique NameTCONS_00020309-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1890

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020309-protein ID=TCONS_00020309-protein|Name=TCONS_00020309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1890bp
CFIIHIISIVDFVRTSPPATTSIAAPLATTASIATTPPTATTPSLETTGA
LPLTSLEEREVTRNNLIGQIPQWKRTWHVSFEFKLLDVSPHWTNIIRLST
GSQNIGYGMRIPMVIIRQNTTIMSVCTGIDDSNNWCTWSTLELNLWYSLE
ISQFQEELKYYFAVRLNHTEVRRVENTKPQIYRDVNVFASDALHQPARAM
IRKLQYYNLSEYEFTLISGTLIDTIPTWSPTWYVTFQIKPIGIHNTWSNI
LRFTAGIGNRESIGDRAPGLWFTRGAPKLHVGTALGNKVNHVFTSENIFP
LHSWTEVEVVQKVIESKTMLVVRINGTVVHQVENTIPRTFFNVRVFASDE
FYDPAIARVRQMEYGNLPDDYCHLPNAPIGAVGLGAKCIMVMDLVELKYN
GEGLAYCAEKYGGEMITLNSLEEFNQLTDYLQPGVFLAAASDREEEGVLK
WQDNHVGTPLEIVGENSLDKNCIRIVNHLSDKRLEWYKCTEKKHQLVCQW
RHGLSECTKDHGFQYKNKCFREFSQDVLKRSVADEMCHSWGATLFMPDSN
KEVQFISDFLRYRRTWMGATDSESEGLLKWDDGTTSATKWTFLTERNIAN
SRLKILGAFGRNFPSETNNGKVYLGGVVDERFDPEEIITFENKQDRTAPN
QWLGFQDRIFANEYLKIEFWIKFVSIMPLKSNGFGIKVYGVIFNGWLDGC
VVDEWCQVSLEIQNRNSGDGDHVLLIFDTIPHKQIVRIAKFGIKIGKGNH
KDGDFRSQIELVNQAEDKDCTRFKPIADFSRMYRWRECEMNQNDPDFAAL
CQKIIGEIVSEWGEWSPCSRECKRGTKTRARICYDQTLFDEDDNSCGGEL
LTDEQECLTRENCQGSGYYLAEVQQSCDEFCASKELGCSSEIETGNSINA
FMDVLLPYTTDPTRIEWQKTYSPGCLVGDVCVEFEGVPNEVKCDRRPEED
NFRRFCHCVNETDVGFGPWSPWSECSVTCNGTRNRQRTCFDYCDGQVEEI
ENCGAQYCPIHGGLSEWSQWSCCDASCGGGTTTRTRLCDAPAPQYNGNDC
IGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTCNPANY
GGNPDCPGPNEDKQPCNVDVCREKILTCNLRFEYEFDEEMLDPESIAYKK
FKLTLEAEMRGVYAEGGGAMKDQLINIQIHSLQPGSVIANFTVVYASMDQ
DQTLFFQDNVEMFGAFGKLEILPSSNNTFEIGPDLLTEPPSNITAFSPSP
EILSISWNALNQSNVDNYIIFYREKLLSNQPYSTYATENTTAHLTWLKPG
TEYVYRVLAFSNGEGNGIASLLSSVWTMEKLPLVSPLDIKALSSGPFSIY
VSWIGVPQEQMNGIPLGYHIYAYSQNSLVSTQNVSFDLSGVSYTEGLESS
TSYIFEVCAFNSAGDGPCDKASARTLNSAPSAPPQNIYISSIKTHTQLTI
HWSPPPADQIHGDLLSYKIKVFLIKSGADVYINPKIDIYDLHPSLNSLTL
KFLDANTFYDFELMAVNQFGEGVSENIVGRTCLCPPVVSTNYYLLAPYLT
EDADNQLSGVFGEMLQNAIQATCGVCNSPNGLLHSKLDTLRNGRESLAKK
TSELKILKEIDEFTDLSFPIIGNTHSDEMVGYPFVPLVGHPGVVAIVRDK
NINEIVIEMIMMILGIYPLIGLNFLMMVLAGYIVWLLEACNNPDEDIDFS
KTWIRGIYEGWYWAFITQGTHGFGDFTVTRFYSRCFAVVWSLFGVVMTSL
VIGALVTALTTVNGAAEFKVYGSEVGALNGSFEEKLGLLRNGKVNEKRAY
KTITELRDDLLANEIKGVLLDAYTAGANAHLFADERLRVATKLEYPRSYG
FVLSGDLKSMAAEFRSYIKSDEERILKALSNSTVPMGVRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011399XLOC_011399Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020309TCONS_00020309Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR000884TSP1_rpt
IPR003961FN3_dom
IPR000082SEA_dom
IPR016186C-type_lectin-like/link
IPR013783Ig-like_fold
IPR016187CTDL_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 507..616
e-value: 0.0011
score: 28.3
coord: 377..499
e-value: 0.27
score: 9.5
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 533..589
e-value: 7.2E-8
score: 33.0
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 515..590
score: 9.754
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 809..864
e-value: 2.1E-6
score: 37.3
coord: 1014..1066
e-value: 1.5E-10
score: 51.0
coord: 966..1009
e-value: 8.8E-8
score: 41.9
coord: 1071..1122
e-value: 8.1E-11
score: 51.9
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1067..1121
e-value: 3.4E-11
score: 42.8
coord: 1011..1065
e-value: 6.1E-13
score: 48.4
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 1073..1121
e-value: 4.3E-9
score: 36.4
coord: 810..863
e-value: 1.1E-5
score: 25.5
coord: 967..1008
e-value: 1.9E-7
score: 31.1
coord: 1015..1065
e-value: 6.8E-9
score: 35.7
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 806..864
score: 10.891
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1011..1066
score: 12.181
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 963..1009
score: 10.679
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 1068..1122
score: 12.195
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 807..860
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 962..1008
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1010..1060
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1067..1118
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 1430..1522
e-value: 1.2E-6
score: 38.1
coord: 1237..1317
e-value: 6.4E-7
score: 39.0
coord: 1333..1416
e-value: 0.032
score: 23.4
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 1433..1522
e-value: 1.2E-8
score: 35.1
coord: 1239..1314
e-value: 1.2E-8
score: 35.1
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1335..1431
score: 13.207
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1239..1330
score: 15.764
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1433..1536
score: 15.535
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1336..1425
e-value: 2.84329E-7
score: 49.4171
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1433..1531
e-value: 1.44194E-9
score: 56.3507
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1238..1327
e-value: 4.78775E-11
score: 60.9731
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1395..1529
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 1238..1417
NoneNo IPR availableGENE3D1.10.287.70coord: 1666..1816
e-value: 1.2E-15
score: 56.8
NoneNo IPR availableGENE3D2.30.90.10coord: 809..857
e-value: 2.8E-9
score: 36.9
coord: 965..1010
e-value: 5.4E-8
score: 32.8
NoneNo IPR availableCDDcd00037CLECTcoord: 518..590
e-value: 5.12987E-8
score: 52.237
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1656..1762
IPR000082SEA domainPFAMPF01390SEAcoord: 1126..1200
e-value: 3.6E-6
score: 27.1
IPR000082SEA domainGENE3D3.30.70.960coord: 1124..1212
e-value: 9.9E-8
score: 31.6
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 375..505
e-value: 1.2E-6
score: 27.9
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 506..808
e-value: 2.0E-12
score: 46.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1332..1426
e-value: 5.9E-12
score: 45.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1223..1331
e-value: 1.8E-13
score: 50.1
coord: 1427..1537
e-value: 2.1E-12
score: 46.7
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 510..589
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 378..501

Blast
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BLAST of TCONS_00020309-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.898e-37
Identity = 104/328 (31.71%), Postives = 136/328 (41.46%), Query Frame = 0 
Query:  810 SEWGEWSPCSRECKRGTKTRARICYDQTLFDEDDNSCGGELLTDEQECLTRENCQGSGYYLAEVQQSCDEFCASKELGCSSEIETGNSINAFMDVLLPYTTDPTRIEWQKTYSPGCLVGDVCVEFEGVPNE------VKCDRRPEEDNFRRFCHCVNETDVGFGPWSPWSECSVTC-NGTRNRQRTCFD--------YCDGQVEEIENCGAQYCPIHGGLSEWSQWSCCDASCGGGTTTRTRLCDAPAPQYNGNDCIGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNPDCPGPNEDKQPCNVDVC 1121
            S+W  W  CS  C +G + R+R+C +Q L       C G  L          NCQ        V  S  E+   +E  C+     GN                      +T +  C   +  V+  G P E      + C+ RP          C       +  W PW  CS +C  GT+ R R C +        YCDG   +++ C  + CPIHG  + W+ WS C  SCGGG   RTR C  P PQY G  C G+ V S+ C    CP    W+ WS W +C + CN G   R RTC NP    G   C GP+   Q CN D+C
Sbjct: 4533 SQWSAWRACSVTCGKGIQKRSRLC-NQPLPANGGKPCQGSDLE-------MRNCQNKP---CPVDGSWSEWSLWEE--CTRSCGRGN----------------------QTRTRTC--NNPSVQHGGRPCEGNAVEIIMCNIRP----------C--PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811

HSP 2 Score: 127.102 bits (318), Expect = 6.794e-29
Identity = 67/168 (39.88%), Postives = 81/168 (48.21%), Query Frame = 0 
Query:  965 GFGPWSPWSECSVTC-NGTRNRQRTCFDY--------CDGQVEEIENCGAQYCPIHGGLSEWSQWSCCDASCGGGTTTRTRLCDAPAPQYNGNDCIGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTCN--PANYGGNPDCPGPNEDKQPCNVDVC 1121
            GF  WS W  CSVTC  G + R R C           C G   E+ NC  + CP+ G  SEWS W  C  SCG G  TRTR C+ P+ Q+ G  C GN V+   C +  CPV   W+ W  W +C + C  G   R R CN  P  +GG+  C G     Q CN   C
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGS-YCDGAETQMQVCNERNC 4697

HSP 3 Score: 105.531 bits (262), Expect = 2.355e-22
Identity = 87/310 (28.06%), Postives = 113/310 (36.45%), Query Frame = 0 
Query:  771 TRFKPIADFSRMYRWRECEMNQNDPDFAALCQKIIGEIVSEWGEWSPCSRECKRGTKTRARICYDQTLFDEDDNSCGGELLTDEQECLTRENCQGSGYYL-----AEVQQSCDEFCASKELGCSSEIETGNSINAFMDVLLPYTTDPTRIEWQKTYSPGCLVGDVCVEFEGVPNEVKCDRRPEEDNFRRFCHCVNETDVGFGPWSPWSECSVTCNGTRNRQ-RTCFD--------YCDGQVEEIENCGAQYCPIHGGLSEWSQWSCCDASCGGGTTTRTRLCDAPAPQYNGNDCIGNLVDSNDCGVGNCP 1066
            TR +   + S  +  R CE N  +     +    +    S W  W  CS  C +GT+TRAR+C +           G E  T  Q C  R NC   G +      +    SC      +  GCS                                       D   ++ G     KC+    + +F     C   T   + PWS W  CS TCNG + R+ RTC +         C G   +I+ C    CP+ G    W  WS C ASCGGG  TR RLCD P P   G  C G+      C V  CP
Sbjct: 4608 TRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAE--TQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCS---------------------------------------DPVPQYGGR----KCEGSDVQSDFCNSDPC--PTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

HSP 4 Score: 104.76 bits (260), Expect = 4.099e-22
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 0 
Query: 1010 IHGGLSEWSQWSCCDASCGGGTTTRTRLCDAPAPQYNGNDCIGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTCN--PANYGGNPDCPGPNEDKQPCNVDVC 1121
            +HGG S+WS W  C  +CG G   R+RLC+ P P   G  C G+ ++  +C    CPVD +W+EWS+W  C + C  G+  R RTCN     +GG P C G   +   CN+  C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRP-CEGNAVEIIMCNIRPC 4640
The following BLAST results are available for this feature:
BLAST of TCONS_00020309-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN15.898e-3731.71Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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