TCONS_00020299-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020299-protein
Unique Name	TCONS_00020299-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	636

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020299-protein ID=TCONS_00020299-protein|Name=TCONS_00020299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp
MIATNDEIFEALSKQFEELQSNLECFLSPQEDLSSQLISSSKVLYDSLEQ
NDVTKNNNLPKKLLTKGFDNEQIWQQLNLNNTGLLRNSKKFIGKIENDDI
SLMPGNDESIEEMQNGDSEYDDFESDAENSEEDIEESSDSKSVENEGEEV
DEEDLENIEEFDEEENSKKIEAKKYNKSIVDDKFFKLRQLEEFLDQQDRL
EELRRDANPDKDDGGEGSDEEDGDENIDMFAEMDDDDDLDEEDDQEENLM
YNDFFDPPPQTKEDKSDHKKKAQAKPEKKTSKKTVSFDEDQVANEEEDEG
KEKDESEEEMEGEMEETKKSVFERRQEEISKKISKLEEANVSAKPWQLLG
ETTSKTRPVNSLLEEHVTFDHTSVGTPVITEETTNTIEDIIKQRIRDQAW
DDVERKVKPATEPHEYKRAPELNMEKSKLSLAQVYEKEYLKQMEDDKEEK
ENEDHVEIQKLMDKLFVKLDALSNFYFTPKPAKPDIKIITNTPSLQMEEV
TPITMTSASQMAPEEVHEKKKGDVIGEGEKSTEDRKRERRQKKIKKKFAV
KEREKKEALKAKTTGKTSKKKAVEQLKKGVRNTVLTEKSSVSSKGLTSST
QFFNKLQDEVSKKISAHKAKDEGPKRKKQKTQHLKL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011393	XLOC_011393	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020299	TCONS_00020299	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012173	Mpp10

Vocabulary: **Cellular Component**
Term	Definition
GO:0005732	small nucleolar ribonucleoprotein complex
GO:0034457	Mpp10 complex
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0034457	Mpp10 complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 296..316
None	No IPR available	COILS	Coil	Coil	coord: 113..140
None	No IPR available	COILS	Coil	Coil	coord: 319..339
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 506..580
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 612..636
IPR012173	U3 small nucleolar ribonucleoprotein complex, subunit Mpp10	PFAM	PF04006	Mpp10	coord: 19..610 e-value: 2.2E-166 score: 554.7
IPR012173	U3 small nucleolar ribonucleoprotein complex, subunit Mpp10	PIRSF	PIRSF017300	snoRNP_Mpp10	coord: 3..636 e-value: 4.8E-130 score: 433.0

Blast

[Close]

BLAST of TCONS_00020299-protein vs. Swiss-Prot (Human)
Match: MPP10 (U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 8.268e-100
Identity = 260/658 (39.51%), Postives = 376/658 (57.14%), Query Frame = 0

Query:   24 ECFLSPQEDLSSQLISSSKVLYDSLEQNDVTKNNNLP----KKLLTKGFDNEQIWQQLNLNNTGLLRNSKKFIGKIEND-DISLMP----------GND--------------ESIEEMQNGDSEYDDFESDAENSEEDIEESSDSKSVENEGEEVDEEDLENIEEFDEEENSKKIEAKKYNKSIVDDKFFKLRQLEEFLDQQDRLEELRRDANPDKDDGGEG----SDEEDGDENIDMFAEMDDDDDLDEEDDQEENLMYNDFFDPPPQTKEDKSDH-------KKKAQAKPEKKTSKKTVSFDEDQVANEEEDEGKEK-----------DESEEEMEGEMEETK-----KSVFERRQEEISKKISKLEEANVSAKPWQLLGETTSKTRPVNSLLEEHVTFDHTSVGTPVITEETTNTIEDIIKQRIRDQAWDDVERKVKPATEPHEYKRAPELNMEKSKLSLAQVYEKEYLKQMEDDKEEKENEDHVEIQKLMDKLFVKLDALSNFYFTPKPAKPDIKIITNTPSLQMEEVTPITMTSASQMAPEEVHEK-KKGDVIGEGEKSTEDRKRERRQKKIKKKFAVKEREKKEALKAKTT----GKTSKKKAVEQLKKGVRNTVLTEKSSV-----SSKGLTSSTQFFNKLQDEVSKKIS 615
            ECFL+ QE L+S+  S +KVLYD    N + +N  +     +KL+ + FD+EQIWQQL L N  +L+  +  + +  ND DISL+P          G++              E + +M N D E  +    AENS +   +   S    +E  ++D  D+  +E+  + +N  K + K   KSIVDDKFFKL ++E +L+  ++ EE + D + +++D        SDE++G     +F          +      NL Y DFFDP    ++  + H       K+  +   E+         DED    E ED  + K           D++E E  G +   K     KS FE+RQE++++KI+ LE+  +  KPWQL GE T++ RP NSLLEE + FDH     PVITEETT  +EDIIKQRIRDQAWDDV RK KP  + +EYK+   L+ EKSKLSLA++YE+EY+K  +    E+EN +HVEIQK+MD LF+KLDALSNF+F PKP  P+IK+++N P++ MEEV P++++ A+ +APEE+ EK K GD+    EK+  D+KRERR+KK +K+  +KE+EK+  L  K++    GK SK  A E+LK+  +    T K+S        K L SS  FF+KLQD+V  +I+
Sbjct:   26 ECFLTIQEGLASKFTSLTKVLYDF---NKILENGRIHGSPLQKLVIENFDDEQIWQQLELQNEPILQYFQNAVSETINDEDISLLPESEEQEREEDGSEIEADDKEDLEDLEEEEVSDMGNDDPEMGE---RAENSSK--SDLRKSPVFSDEDSDLDF-DISKLEQQSKVQN--KGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDNDEEEEDIDFFEDIDSDEDEGG----LFGSKKL-----KSGKSSRNLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEEAEELSISETDEDDDLQENEDNKQHKESLKRVTFALPDDAETEDTGVLNVKKNSDEVKSSFEKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEETTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYIKLNQQKTAEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITMEEVAPVSVSDAALLAPEEIKEKNKAGDIKTAAEKTATDKKRERRKKKYQKRMKIKEKEKRRKLLEKSSVDQAGKYSKTVASEKLKQLTK----TGKASFIKDEGKDKALKSSQAFFSKLQDQVKMQIN 659

The following BLAST results are available for this feature:

BLAST of TCONS_00020299-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020299-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MPP10	8.268e-100	39.51	U3 small nucleolar ribonucleoprotein protein MPP10...	[more]

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TCONS_00020299-protein (polypeptide) - C. hemisphaerica