TCONS_00020157-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020157-protein
Unique NameTCONS_00020157-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length930

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020157-protein ID=TCONS_00020157-protein|Name=TCONS_00020157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=930bp
MDLSENLMVNYISVMPPSKRQSEIQQPARKSFSFGTTISEKTLFKRQRVE
RHYSLSNLTDIVLSVDSLPHNVINTPIATATEISMNYLQKLIPDEVLLKI
CHYVRPKDLCRLACTCKRIYEICEDNKLWERLHRQIYTLDYPLQKTKNNL
YEVVSLISGPGRPETYWKKFFPLLYRAHHVSKDQQLSRQLQHLGRKCYGS
IEEALNNKAPIILVHSGTYEESVEVNHQVTIIGTGIPGTPSETCITNTSK
TIFRFGPQAAKSIIAFLSISILRDEASSSVGYCLDVGQDSSPIIQNCHIT
SKSTCVAAVHVHGPGSSPKVVRCKISECNNVGLYIHDGAQGVFEDNEISS
NRLAGVWVKTQANPIMKRNEICHGKDAGFFIFDGGMGYYEENNVHSNRIA
GIEVRSEANPTVVRCHIHHGFTGGIYVHDSGRGEFLCNQIHSNTFAGVWV
TSGSNPTIKDNNIYHGEQGGIYVFGEGRGLIENNDIYGNALAGIQIRSNS
NPIVRKNRIHHGKHGGIYIHECGMGLIEDNEIYGNTLAGIWITTGSAPIL
RLNRIHSGKQVGVYFYDKGCGTLENNEIYNHKYSGIQIRSGSSPVIRKNK
IWGGKNGGVLIYNGGLGILEDNEIFDNAMAGVWIKTESNPILRRNKIHDG
HEGGICIFNNGKGLLEDNDIFRNALTGVLISSQSFPVLRRNRIFQGGAAG
IEITNGAGGVLERNEIFNNKFDGICLATGVEPKLIDNNCHDNKEELSEAI
EEGKCLYQVSGNACYPMHDFYKCVTCSSTENLAICVNCIKKCHQGHEVQF
VRHDRFFCDCGAGTTPNCCQLVPSSQSPTRDVTNNNNTQQHQNKNNINNT
TNNSNRKRKSATSSRTRTTRTLKRNKVASTTTSNTSTNSASASNNSSTST
RSKTRNQRRNASQLDNENQQLEQSLSVEGN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011325XLOC_011325Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020157TCONS_00020157Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006633Carb-bd_sugar_hydrolysis-dom
IPR003126Znf_UBR
IPR006626PbH1
IPR001810F-box_dom
IPR012334Pectin_lyas_fold
IPR022441Para_beta_helix_rpt-2
IPR011050Pectin_lyase_fold/virulence
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 904..930
NoneNo IPR availablePFAMPF13229Beta_helixcoord: 590..738
e-value: 8.2E-24
score: 84.2
coord: 400..547
e-value: 5.6E-28
score: 97.7
NoneNo IPR availableGENE3D1.20.1280.50coord: 88..201
e-value: 1.4E-14
score: 53.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 829..930
IPR006633Carbohydrate-binding/sugar hydrolysis domainSMARTSM00722completecoord: 490..612
e-value: 0.25
score: 20.4
coord: 335..474
e-value: 6.1E-10
score: 49.0
coord: 628..757
e-value: 0.023
score: 23.9
IPR003126Zinc finger, UBR-typeSMARTSM00396push_1coord: 758..822
e-value: 9.3E-5
score: 28.0
IPR003126Zinc finger, UBR-typePFAMPF02207zf-UBRcoord: 768..820
e-value: 1.2E-7
score: 31.6
IPR003126Zinc finger, UBR-typePROSITEPS51157ZF_UBRcoord: 753..824
score: 8.469
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 568..590
e-value: 1200.0
score: 6.8
coord: 407..429
e-value: 120.0
score: 11.5
coord: 522..544
e-value: 0.96
score: 18.5
coord: 289..313
e-value: 5200.0
score: 2.1
coord: 683..705
e-value: 840.0
score: 7.8
coord: 614..636
e-value: 120.0
score: 11.5
coord: 706..728
e-value: 39.0
score: 13.1
coord: 591..613
e-value: 97.0
score: 11.8
coord: 315..337
e-value: 1300.0
score: 6.3
coord: 637..659
e-value: 390.0
score: 9.8
coord: 499..521
e-value: 2.2
score: 17.3
coord: 545..567
e-value: 4300.0
score: 2.7
coord: 361..383
e-value: 1700.0
score: 5.7
coord: 476..498
e-value: 5.5
score: 16.0
coord: 453..475
e-value: 0.25
score: 20.4
coord: 384..406
e-value: 1400.0
score: 6.1
coord: 430..452
e-value: 2600.0
score: 4.2
coord: 660..682
e-value: 650.0
score: 8.6
coord: 338..360
e-value: 9.0
score: 15.2
IPR001810F-box domainSMARTSM00256fbox_2coord: 92..132
e-value: 2.1E-6
score: 37.3
IPR001810F-box domainPFAMPF12937F-box-likecoord: 92..133
e-value: 4.1E-12
score: 45.7
IPR001810F-box domainPROSITEPS50181FBOXcoord: 86..132
score: 12.173
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 92..176
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 579..927
e-value: 3.1E-25
score: 88.7
coord: 202..445
e-value: 1.7E-30
score: 106.0
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 446..578
e-value: 1.8E-24
score: 86.0
IPR022441Parallel beta-helix repeat-2TIGRFAMTIGR03804TIGR03804coord: 424..464
e-value: 3.5E-6
score: 24.6
coord: 470..509
e-value: 6.7E-7
score: 26.9
coord: 700..743
e-value: 1.2E-6
score: 26.0
coord: 516..557
e-value: 1.3E-5
score: 22.8
coord: 562..601
e-value: 3.6E-5
score: 21.3
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 606..746
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 283..411
coord: 180..255
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 442..631

Blast
[Close]
BLAST of TCONS_00020157-protein vs. Swiss-Prot (Human)
Match: FBX11 (F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3)

HSP 1 Score: 874.389 bits (2258), Expect = 0.000e+0
Identity = 426/766 (55.61%), Postives = 550/766 (71.80%), Query Frame = 0 
Query:   87 YLQKLIPDEVLLKICHYVRPKDLCRLACTCKRIYEICEDNKLWERLHRQIYTLDYPLQKTK-NNLYEVVSLISGPGRPETY-----WKKFFPLLYRAHHVS---KDQQLSRQLQHLGRK---CYGSIEEALNNKAP-----IILVHSGTY-EESVEVNHQVTIIGTGIPGTPSETCITNTSKTIFRFGPQAAKSIIAFLSISILRDEASS---SVGYCLDVGQDSSPIIQNCHITSKSTCVAAVHVHGPGSSPKVVRCKISECNNVGLYIHDGAQGVFEDNEISSNRLAGVWVKTQANPIMKRNEICHGKDAGFFIFDGGMGYYEENNVHSNRIAGIEVRSEANPTVVRCHIHHGFTGGIYVHDSGRGEFLCNQIHSNTFAGVWVTSGSNPTIKDNNIYHGEQGGIYVFGEGRGLIENNDIYGNALAGIQIRSNSNPIVRKNRIHHGKHGGIYIHECGMGLIEDNEIYGNTLAGIWITTGSAPILRLNRIHSGKQVGVYFYDKGCGTLENNEIYNHKYSGIQIRSGSSPVIRKNKIWGGKNGGVLIYNGGLGILEDNEIFDNAMAGVWIKTESNPILRRNKIHDGHEGGICIFNNGKGLLEDNDIFRNALTGVLISSQSFPVLRRNRIFQGGAAGIEITNGAGGVLERNEIFNNKFDGICLATGVEPKLIDNNCHDNKEELSEAIEEGKCLYQVSGNACYPMHDFYKCVTCSSTENLAICVNCIKKCHQGHEVQFVRHDRFFCDCGAGTTPNCCQLVPSSQSPTRD 831
            YLQ+ +PDEV+LKI  Y+  +DLCR AC CKR  E+  D  LW+RL+ +++    P+   +    Y++         PE Y     WK+ F  LY+  HV     +   S   ++ GR+    Y +IE+AL          +I VHSG Y +E + +   +T+IG        +  I NT  + F F   +  + + +++I    D+ S+   +  +CL++  + SPII +C I S  T  +AV V G G+ P +  C IS+C NVGLYI D AQG++EDNEIS+N LAG+WVK   NPI++RN I HG+D G F FD GMGY+E  N+H NRIAG EV++ ANPTVVRC IHHG TGGIYVH+ GRG+F+ N+I++N FAGVW+TS S+PTI+ N+I++G QGG+Y+FG+GRGLIE NDIYGNALAGIQIR+NS PIVR N+IH G+HGGIY+HE G G+IE+NE+Y NTLAG+W+TTGS P+LR NRIHSGKQVGVYFYD G G LE+N+IYNH YSG+QIR+GS+P IR+NKIWGG+NGG+L+YN GLG +EDNEIFDNAMAGVWIKT+SNP LRRNKIHDG +GGICIFN G+GLLE+NDIFRNA  GVLIS+ S P+LR+NRIF G AAGIEITN A   LE N+IFNN+F G+ LA+GV   + DN   +N++ + +A+  G+CLY++S    YPMHDFY+C TC++T+  AICVNCIKKCHQGH+V+F+RHDRFFCDCGAGT  N C L   +  PT D
Sbjct:  154 YLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQI--------NPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTL---AGEPTHD 908
The following BLAST results are available for this feature:
BLAST of TCONS_00020157-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX110.000e+055.61F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE... [more]
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