TCONS_00019977-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019977-protein
Unique NameTCONS_00019977-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length206

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019977-protein ID=TCONS_00019977-protein|Name=TCONS_00019977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MTAMMHPLKEKRRANKPLLERKRRARINDSLTDLKHIVLSSLNKDVSKYT
KMEKVDILDMTVRFLKGRHHLDHRQDSTTAYRTGYQESTKNVYQSIMTME
GIDHNIKCRILSNLANSQRQDIKHSPPPSPTISEGSIPPSPPLTLYNPPS
SHHYSTPSPPMNTRLIHPSMAPTLPPLIRKPAQQPNMQELPPSTQNMEKT
AVWRPW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011221XLOC_011221Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019977TCONS_00019977Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 17..76
e-value: 3.7E-8
score: 43.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 12..66
e-value: 2.5E-11
score: 43.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3D4.10.280.10coord: 8..201
e-value: 7.5E-13
score: 48.0
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 11..68
score: 14.297
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 9..66
e-value: 1.21937E-12
score: 58.7647
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 9..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..206

Blast
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BLAST of TCONS_00019977-protein vs. Swiss-Prot (Human)
Match: HES1 (Transcription factor HES-1 OS=Homo sapiens GN=HES1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.777e-23
Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = 0 
Query:   10 EKRRANKPLLERKRRARINDSLTDLKHIVLSSLNKDVSKYTKMEKVDILDMTVRFLKGRHHLDHRQDSTT------AYRTGYQESTKNVYQSIMTMEGIDHNIKCRILSNLANSQRQ 120
            E R+++KP++E++RRARIN+SL+ LK ++L +L KD S+++K+EK DIL+MTV+ L+           +T       YR G+ E    V + + T EG++  ++ R+L +LAN   Q
Sbjct:   33 EHRKSSKPIMEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALSTDPSVLGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQ 149
The following BLAST results are available for this feature:
BLAST of TCONS_00019977-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HES12.777e-2338.46Transcription factor HES-1 OS=Homo sapiens GN=HES1... [more]
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