TCONS_00019880-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019880-protein
Unique Name	TCONS_00019880-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	610

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019880-protein ID=TCONS_00019880-protein|Name=TCONS_00019880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp
MSNKTHSESDSSPEENKLYISPSFVRDREEKGWRSYATSSELMTTASAIF
SQINNPSPDDDNQVNFLYDYYGMTDETRQEPPSPGHSPVTCTSKEIAEHH
GEEGSSSSREHEYEEHHAYHHHHHHINVSDNVDIPLTSKDNVSPELEPRH
SFAEKPTLSIFSSQASESSANNQRKSYSSIPPLNKNEKSSSSHANTSSPV
IETESAPKSSFNHYSRPMLYYEDNNQLSFRYMYVLEAQTSLVQKRGEDSL
TYLNKGQFYFISFEAQHSKAVRVKSIIHLVFRNEKEPDNELTHWRYWYNQ
QPNPNQRALDIDMKSCQNIEDVEEVGYNALAVYWDPNAKSKVSLRINCLS
TDFSAQKGVKGIPLHLQIDTFEDFSDATIPTHRAFCQIKVFRDKGAERKN
KDEAKTVNKRVVKYLKGSDNAQADMLHVFQMQNKVTFLYPTTNILSKSVV
FVPPKEREKERTRSTDGATSINTGGFFSQLRERENKRGFNAALSNAKDDL
EQLDVLPRSKKANFCMKKSPAVTIYVRKEEEKAYNALMLEVATLDSLKNA
ISVKYNVPEEMIKQVFKKTKKGILVFVDDQLVEQFVDEDDFLISIDFDNQ
MGHFEVVFNC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011188	XLOC_011188	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019880	TCONS_00019880	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007604	CP2

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007604	CP2 transcription factor	PFAM	PF04516	CP2	coord: 223..411 e-value: 3.2E-61 score: 206.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Blast

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BLAST of TCONS_00019880-protein vs. Swiss-Prot (Human)
Match: GRHL1 (Grainyhead-like protein 1 homolog OS=Homo sapiens GN=GRHL1 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.699e-73
Identity = 195/616 (31.66%), Postives = 303/616 (49.19%), Query Frame = 0

Query:   29 EEKGWRSYATSSELMTTASAIFSQINNPSPDDDNQVNFLYDYYGMTDETRQ-------EPPSPGHS-----PVTCTSKEIAEHHGEEGSSSSREHEYEEHHAYHHH-----HHHINVSDN---VDIPLTSKDNVSPELEPRHSFAEKPTLSIFSSQASESSANNQRKSYSSIPPLNKNEKSSSSHANTSSPVIETESAPKSSFNHYSR----------------PMLYYED---NNQLSFRYMYVLEAQTSLVQKRGEDSLTYLNKGQFYFISF------EAQHSKAVRVKSIIHLVFRNEKEPDNELTHWRYWYNQQPNPNQRALDI-DMK-SCQNIEDVEEVGYNALAVYWDPNAKSKVSLRINCLSTDFSAQKGVKGIPLHLQIDTFEDFSDATIPTHRAFCQIKVFRDKGAERKNKDEAKTVNKRVVKYLKGSDNAQADMLHVFQMQNKVTFLYPTTNILSKSVVFVPPKE-REKERTRSTDGATSINTGGFFSQLRERENKRGFNAALSNAKDDLEQLDVLPRSKKANFCMKKSPAVTIYVRKEEEKAYNALMLEVATLDSLKNAISVKYNVPEEMIKQVFKKTKKGILVFVDDQLVEQFVDEDDFLISID 596
            E++ W+S+  +   +T A+     IN    D    +  LYDYY +  E R        E P P HS     P+      I+   GE      +   +     + +        H+   D    V I      ++  E +P H FA     +++  + +E      R        LN ++ SS + A  +         P S+F+   +                P +  ED   ++     + Y LEA  SL QK G+ ++TYLNKGQFY I+       E  H    +V+S+I +VF  +K  +++L HW+YW+++Q    QR +DI D K S   I ++EE+ YNA++  WD N ++KV + +NCLSTDFS+QKGVKG+PL++Q+DT+   + +  P HRA+CQIKVF DKGAERK +DE +  +KR V       + +  +L   +  + +T   P  ++ ++ V+F+P       +R        S    G  S L     KRG        +DD     V P +K A   +++   V +YVRKE E+ ++ALML+  +L  L  AIS KY+VP + I ++FKK KKGILV +DD +V+ + +ED F + I+
Sbjct:   29 EDEAWKSFLENP--LTAATKAMMSING-DEDSAAALGLLYDYYKVPRERRSSTAKPEVEHPEPDHSKRNSIPIVTEQPLISA--GENRVQVLKNVPFNIVLPHGNQLGIDKRGHLTAPDTTVTVSIATMPTHSIKTETQP-HGFAVGIPPAVYHPEPTERVVVFDRN-------LNTDQFSSGAQAPNAQ-----RRTPDSTFSETFKEGVQEVFFPSDLSLRMPGMNSEDYVFDSVSGNNFEYTLEASKSLRQKPGDSTMTYLNKGQFYPITLKEVSSSEGIHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTISNIEEIAYNAISFTWDINDEAKVFISVNCLSTDFSSQKGVKGLPLNIQVDTYSYNNRSNKPVHRAYCQIKVFCDKGAERKIRDEERKQSKRKV------SDVKVPLLPSHKRMD-ITVFKPFIDLDTQPVLFIPDVHFANLQRGTHVLPIASEELEGEGSVL-----KRG----PYGTEDDFA---VPPSTKLAR--IEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAISDKYDVPHDKIGKIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIE 605

The following BLAST results are available for this feature:

BLAST of TCONS_00019880-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019880-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRHL1	1.699e-73	31.66	Grainyhead-like protein 1 homolog OS=Homo sapiens ...	[more]

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TCONS_00019880-protein (polypeptide) - C. hemisphaerica