TCONS_00019569-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019569-protein
Unique Name	TCONS_00019569-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	688

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019569-protein ID=TCONS_00019569-protein|Name=TCONS_00019569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=688bp
FQLQNYKKEFQKKLKLYIKIKHSNDTKQRTMMYETGPETIEEVKVQILDD
NSKEKEVDIHQVHIPIHLKFEDLCVKAGEKEILQNVTGEFLPGELVAIMG
PSGAGKSTLLNFLAGRSKGMELTGGDITINNQKPTKTMRRKIGYVLQEDV
FFSHLTVNQTLKFVGEIRLSDSLSSEQKSKIVDEVMDELGLRKCADTVMG
GGIFVTGCSGGEKKRCSIATELITNPSLLMMDEPTSGLDSSTAFNLIQTL
KNLAKTENRTIVTTIHQPSSHVFHMFDKLILISGGKVAYCGKTSEVLDFF
EHLGSPCYPNWNPADFIMEMLTGESELTQTIADKFIEYKKQKKEKEESTS
NGHTNGHVNGQANGGSSKTSPKRLSMKKKKISVFSNGFFSNENEDDNDVK
LSKWPTGFRTQCKALCQRAFIQSKKEMLDKLGFIQTLGLALVVSLLWFNT
PYDEESLVDRQGAIFFVLVYTVLHPIFYNVMTFPTERDVIQKERAAGMYR
LSSYYFAKLISEIPALLLQPVILHIITYWASGLNRSPYYFISLLTIATGA
FLAQTIGLLIGTVIKQFKRALTVTALVALGSMLLGGFYTKRVPEWMYWAR
YVSMISYSFNILVRVEFEHASTTFKCAAESAFDICKNNNTTVLTGKDILP
HITTIDIGIAESFGVLVLMILATRLTFYYVLKYLNKPT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011001	XLOC_011001	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019569	TCONS_00019569	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR003439	ABC_transporter-like
IPR013525	ABC_2_trans
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016887	ATPase activity
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 92..286 e-value: 3.1E-10 score: 50.0
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 83..236 e-value: 5.6E-29 score: 101.3
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 68..309 score: 19.748
None	No IPR available	GENE3D	3.40.50.300		coord: 64..306 e-value: 5.0E-58 score: 195.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..375
IPR013525	ABC-2 type transporter	PFAM	PF01061	ABC2_membrane	coord: 410..617 e-value: 6.2E-37 score: 127.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 67..305

Blast

[Close]

BLAST of TCONS_00019569-protein vs. Swiss-Prot (Human)
Match: ABCG2 (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 273.863 bits (699), Expect = 2.386e-82
Identity = 186/575 (32.35%), Postives = 295/575 (51.30%), Query Frame = 0

Query:   57 VDIHQVHIPIHLKFEDL-CVKAGEKEILQNVTGEFLPGELVAIMGPSGAGKSTLLNFLAGRSKGMELTGGDITINNQKPTKTMRRKIGYVLQEDVFFSHLTVNQTLKFVGEIRLSDSLSSEQKSKIVDEVMDELGLRKCADTVMGGGIFVTGCSGGEKKRCSIATELITNPSLLMMDEPTSGLDSSTAFNLIQTLKNLAKTENRTIVTTIHQPSSHVFHMFDKLILISGGKVAYCGKTSEVLDFFEHLGSPCYPNWNPADFIMEMLTGESELTQT------IADKFIEYKKQKKEKEESTSNGHTNGHVNGQANGGSSKTSPKRLSMKKKKISVFSNGFFSNENEDDNDVKLSKWPTGFRTQCKALCQRAF---IQSKKEMLDKLGFIQTLGLALVVSLLWFNTPYDEESLVDRQGAIFFVLVYTVLHPIFYNVMTFPTERDVIQKERAAGMYRLSSYYFAKLISE-IPALLLQPVILHIITYWASGLN-RSPYYFISLLTIATGAFLAQTIGLLIGTVIKQFKRALTVTALVALGSMLLGGFYTK--RVPEWMYWARYVSMISYSFNILVRVEF 617
            +  H +   + LK   L C K  EKEIL N+ G   PG L AI+GP+G GKS+LL+ LA R     L+G D+ IN        +   GYV+Q+DV    LTV + L+F   +RL+ ++++ +K++ ++ V+ ELGL K AD+ +G   F+ G SGGE+KR SI  ELIT+PS+L +DEPT+GLDSSTA  ++  LK ++K + RTI+ +IHQP   +F +FD L L++ G++ + G   E L +FE  G  C    NPADF ++++ G+S            A + IE  KQ K   E  +  + N     +      + S      KKKKI+VF               K   + T F  Q + + +R+F   + + +  + ++  I T+ L LV+  ++F    D   + +R G +FF+        +   V  F  E+ +   E  +G YR+SSY+  KL+S+ +P  +L  +I   I Y+  GL  ++  +F+ + T+   A+ A ++ L I         A  +  +  +  M+  G       +  W+ W +Y S+  Y F  L   EF
Sbjct:   37 LSFHNICYRVKLKSGFLPCRKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSG-DVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGTQ-FIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSK-QGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKQDKPLIEKLAEIYVNSSFYKETKAELHQLSGGE---KKKKITVF---------------KEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQI--IVTVVLGLVIGAIYFGLKNDSTGIQNRAGVLFFLTTNQCFSSV-SAVELFVVEKKLFIHEYISGYYRVSSYFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADAFFVMMFTLMMVAYSASSMALAIAAGQSVVSVATLLMTICFVFMMIFSGLLVNLTTIASWLSWLQYFSIPRYGFTALQHNEF 586

The following BLAST results are available for this feature:

BLAST of TCONS_00019569-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019569-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCG2	2.386e-82	32.35	ATP-binding cassette sub-family G member 2 OS=Homo...	[more]

You are here

TCONS_00019569-protein (polypeptide) - C. hemisphaerica