TCONS_00019543-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019543-protein
Unique NameTCONS_00019543-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019543-protein ID=TCONS_00019543-protein|Name=TCONS_00019543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MVSDINRTARKHISNTMERREVDEPLCVAINVALLYEDNNFILLNEKDFD
EAVKGVQEIKCDEPRKRAYSANEAFTEHLGVLFYKITGKDELLDAYELQR
VMDMVFAKDLKLSEHNEFSLETCRCLIASIDRNRRGTLNYHQFKKLWFEI
MKWKKLFEVCDENNDKKIDYNELKKAVSRLGFSVKEETIRILKSRYTNRE
GVLDLDDFCGICSKLTTLRNNFEEMELSEKCMTYDRFLMECLYS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010985XLOC_010985Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019543TCONS_00019543Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 152..180
e-value: 1.0E-4
score: 31.6
coord: 122..150
e-value: 21.0
score: 7.1
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 148..183
score: 12.756
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 197..218
score: 5.587
NoneNo IPR availableGENE3D1.10.238.10coord: 3..136
e-value: 2.5E-6
score: 26.9
NoneNo IPR availableGENE3D1.10.238.10coord: 167..212
e-value: 2.7E-10
score: 39.8
NoneNo IPR availableGENE3D1.10.238.10coord: 137..166
e-value: 5.2E-10
score: 38.5
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 161..173
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 71..228

Blast
[Close]
BLAST of TCONS_00019543-protein vs. Swiss-Prot (Human)
Match: GRAN (Grancalcin OS=Homo sapiens GN=GCA PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.215e-24
Identity = 48/163 (29.45%), Postives = 88/163 (53.99%), Query Frame = 0 
Query:   83 FYKITGKDELLDAYELQRVMDMVFAKDLKLSEHNEFSLETCRCLIASIDRNRRGTLNYHQFKKLWFEIMKWKKLFEVCDENNDKKIDYNELKKAVSRLGFSVKEETIRILKSRYTNREGVLDLDDFCGICSKLTTLRNNF---EEMELSEKCMTYDRFLMECL 242
            F  + G+D  +DA ELQR +     +      ++ FSLETCR +IA +DR+  G + ++ FK+LW  +  WK+ F   D++    ++++EL++A+  +G+ +  +T+  +  RY+ + G +  DD+   C KL  L + F   + ++       YD FL   +
Sbjct:   58 FSAVAGQDGEVDAEELQRCL----TQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS-KNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTM 215
The following BLAST results are available for this feature:
BLAST of TCONS_00019543-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRAN5.215e-2429.45Grancalcin OS=Homo sapiens GN=GCA PE=1 SV=2[more]
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