TCONS_00019539-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019539-protein
Unique NameTCONS_00019539-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019539-protein ID=TCONS_00019539-protein|Name=TCONS_00019539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
MNFEDLEPVLVLIFSYLDDSSLRSAELVCKQWLWCIEDGMLWRKLIKQKV
HRETVWKGFGKRRGWMDSLNTFSEEFDHKYFRALYSKTEKDIKNLESNWK
TGKHRLATISCEAEYREEGVYCLQSDGEKIVSGHRDNTVKIWDTKTIAYK
KMIKGHTGSVLCLQYEGNLLITGSSDSTVRIWNLETGQEINKLMQHSDAV
LTLRLQNSTLITGSKDRSIIVWDVHSPNAASLRMKMEGHEKAVHVVDFDD
KYIVSGSGDRTIKVWDSNTFNFIRNLAGHSRGVNCLQYRTPLVVSGSTDQ
TIMLWNVEQGTCLTVFKTYSEMLVRCLQFNDHYIVSGGHDGVLKVWDLKA
ALHGRPEAELFIHSFKHHKNRISHLSIDHFQIVSCSLDDTICILDFDKAS
YSDVIIAFDFVNEFSARKD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010981XLOC_010981Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019539TCONS_00019539Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR001810F-box_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 170..184
score: 38.06
coord: 253..267
score: 43.39
coord: 334..348
score: 39.94
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 108..143
e-value: 0.029
score: 23.5
coord: 229..266
e-value: 1.7E-6
score: 37.6
coord: 269..306
e-value: 9.4E-5
score: 31.8
coord: 146..183
e-value: 2.7E-6
score: 36.9
coord: 309..347
e-value: 5.7E-4
score: 29.2
coord: 186..223
e-value: 3.1E-4
score: 30.1
coord: 358..395
e-value: 0.29
score: 20.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 310..347
e-value: 8.2E-4
score: 20.0
coord: 119..143
e-value: 4.8E-4
score: 20.8
coord: 272..306
e-value: 1.7E-4
score: 22.2
coord: 236..266
e-value: 7.7E-5
score: 23.3
coord: 153..183
e-value: 1.2E-5
score: 25.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 276..315
score: 12.747
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 153..192
score: 15.488
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 324..349
score: 9.606
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 126..146
score: 9.673
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 193..232
score: 11.645
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 236..275
score: 13.817
NoneNo IPR availableGENE3D2.130.10.150coord: 220..303
e-value: 8.7E-27
score: 93.7
NoneNo IPR availableGENE3D1.10.10.670coord: 304..342
e-value: 4.6E-13
score: 48.4
coord: 343..407
e-value: 3.5E-8
score: 32.7
NoneNo IPR availableGENE3D1.20.1280.50coord: 7..103
e-value: 2.9E-10
score: 39.7
NoneNo IPR availableGENE3D2.40.50.140coord: 109..179
e-value: 8.8E-17
score: 60.0
coord: 180..219
e-value: 2.3E-15
score: 55.4
NoneNo IPR availableCDDcd00200WD40coord: 119..391
e-value: 4.4549E-61
score: 200.639
IPR001810F-box domainPFAMPF12937F-box-likecoord: 9..45
e-value: 2.4E-9
score: 36.8
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 7..69
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 170..184
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 253..267
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 293..307
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 210..224
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 130..144
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 334..348
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 126..404
score: 51.227
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 117..395

Blast
[Close]
BLAST of TCONS_00019539-protein vs. Swiss-Prot (Human)
Match: FBW1A (F-box/WD repeat-containing protein 1A OS=Homo sapiens GN=BTRC PE=1 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 1.886e-143
Identity = 211/398 (53.02%), Postives = 275/398 (69.10%), Query Frame = 0 
Query:   13 IFSYLDDSSLRSAELVCKQWLWCIEDGMLWRKLIKQKVHRETVWKGFGKRRGWMDSL----NTFSEEFDHKYFRALYSKTEKDIKNLESNWKTGKHRLATISCEAEYREEGVYCLQSDGEKIVSGHRDNTVKIWDTKTIAYKKMIKGHTGSVLCLQYEGNLLITGSSDSTVRIWNLETGQEINKLMQHSDAVLTLRLQNSTLITGSKDRSIIVWDVHSPNAASLRMKMEGHEKAVHVVDFDDKYIVSGSGDRTIKVWDSNTFNFIRNLAGHSRGVNCLQYRTPLVVSGSTDQTIMLWNVEQGTCLTVFKTYSEMLVRCLQFNDHYIVSGGHDGVLKVWDLKAALHGR-PEAELFIHSFKHHKNRISHLSIDHFQIVSCSLDDTICILDF--DKASYSD 403
            I SYLD  SL +AELVCK+W     DGMLW+KLI++ V  +++W+G  +RRGW   L            + ++RALY K  +DI+ +ESNW+ G+H L  I C +E   +GVYCLQ D +KIVSG RDNT+KIWD  T+  K+++ GHTGSVLCLQY+  ++ITGSSDSTVR+W++ TG+ +N L+ H +AVL LR  N  ++T SKDRSI VWD+ SP   +LR  + GH  AV+VVDFDDKYIVS SGDRTIKVW+++T  F+R L GH RG+ CLQYR  LVVSGS+D TI LW++E G CL V + + E LVRC++F++  IVSG +DG +KVWDL AAL  R P   L + +   H  R+  L  D FQIVS S DDTI I DF  D A+ ++
Sbjct:  196 ILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSET-SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAE 591
The following BLAST results are available for this feature:
BLAST of TCONS_00019539-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBW1A1.886e-14353.02F-box/WD repeat-containing protein 1A OS=Homo sapi... [more]
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