TCONS_00019442-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019442-protein
Unique NameTCONS_00019442-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019442-protein ID=TCONS_00019442-protein|Name=TCONS_00019442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MVELNGHSKPFSRNDGIKPPRTNCRADRITINVSGSIFETFETTLNRYPE
SLLGNRDCRNQYYCSKTNQYYFNRNRKTFESILFFYQSNGKLYRPSNVNL
ILFLEECRFFLIPEANINVVKELECAFLTDKVNDVRDLPGFECNSAIQRA
VWRFLEYPNSTKQARIYFFVQMAFVVISIGIFSSESLADHSHTVDHYNDG
SHFLWTNPFLIAELFISIIFGIDFLLRCIFSPHKKVHFLSVYTYIDLVCL
VPYSIMTSTDDSELTTLARLLKMLRFLRVLKLIRLSTRISKKLRILFVII
KDSWQDLQIFCLGVLLITFFSAAIVFCFEVTEENTKFTSIPKSMWWSLQA
CITLGYGDIVPQTFLGRMLSSVCMIYGLIWMMLPILALGLKVVIYGAEVR
ELKG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010929XLOC_010929Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019442TCONS_00019442Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 69..88
score: 44.12
coord: 366..392
score: 23.75
coord: 273..299
score: 27.64
coord: 158..186
score: 30.32
coord: 211..234
score: 28.91
coord: 237..257
score: 28.57
coord: 337..359
score: 50.56
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 168..383
e-value: 1.9E-18
score: 66.5
NoneNo IPR availableGENE3D1.20.120.350coord: 162..305
e-value: 2.9E-14
score: 52.4
NoneNo IPR availableGENE3D3.30.710.10coord: 26..126
e-value: 2.5E-18
score: 65.6
NoneNo IPR availableGENE3D1.20.5.110coord: 358..388
e-value: 1.9E-6
score: 26.9
NoneNo IPR availableGENE3D1.10.287.70coord: 306..356
e-value: 5.8E-10
score: 38.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 164..385
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 29..117
e-value: 4.2E-23
score: 81.4
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 27..119

Blast
[Close]
BLAST of TCONS_00019442-protein vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 6.249e-66
Identity = 140/412 (33.98%), Postives = 222/412 (53.88%), Query Frame = 0 
Query:    4 LNGHSKPFSRNDGIKPPRTNCRADRITINVSGSIFETFETTLNRYPESLLGNRDCRNQYYCSKTNQYYFNRNRKTFESILFFYQSNGKLYRPSNVNLILFLEECRFFLIPEANINVVKELECAFLTDKVNDVRDLPGFECNSAIQRAVWRFLEYPNSTKQARIYFFVQMAFVVISIGIFSSESLA-----------------DHSHTVDHYNDGSHFLWTNPFLIAELFISIIFGIDFLLRCIFSPHKKVHFLSVYTYIDLVCLVPYSIMTSTDDSELTTLAR---------LLKMLRFLRVLKLIRLSTRISKKLRILFVIIKDSWQDLQIFC----LGVLLITFFSAAIVFCFEVTEENTKFTSIPKSMWWSLQACITLGYGDIVPQTFLGRMLSSVCMIYGLIWMMLPI 385
            L GH +     D   P   +   +R+ IN+SG  FET   TL ++PE+LLG+   R +Y+    N+Y+F+RNR +F++IL++YQS G+L RP NV L +F EE RF+ + E  + + +E E     ++    R LP     +  QR VW   EYP S+  ARI   V +  ++ISI  F  E+L                   +S++   Y   + F  T+PF I E    I F  +FL+R    P K   F ++   ID+V ++PY I   T+ +E    A+         +L+++R +RV ++ +LS R SK L+IL   +K S ++L +      +GV+L   FS+A+ F  E  E  ++F SIP + WW++ +  T+GYGD+VP T  G+++ S+C I G++ + LP+
Sbjct:   15 LPGHPQ-----DTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEE----RPLP----ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSF--TDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLS-RHSKGLQILGQTLKASMRELGLLIFFLFIGVIL---FSSAVYFA-EADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV 406
The following BLAST results are available for this feature:
BLAST of TCONS_00019442-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA26.249e-6633.98Potassium voltage-gated channel subfamily A member... [more]
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