TCONS_00019421-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019421-protein
Unique NameTCONS_00019421-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019421-protein ID=TCONS_00019421-protein|Name=TCONS_00019421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
LSADYREEDFYRKCSCEYSTHFSTTMFVYKGALLILGSFLAWETKRVRVA
ALNDSQFIGMAVYNVFIVSVTTLIVYYAIENFKTYYYQAYVVVAAAILIC
SNVTVILVFVPKLILLFGRNKTLARALSVQTFSFSSSSKDQHSGSTNHLN
SYGGSTNQINSQGLSTNRMSVRNGSTNRIHHTDSNNSSNVVYNRYADEKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010908XLOC_010908Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019421TCONS_00019421Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017978GPCR family 3, C-terminalPFAMPF000037tm_3coord: 10..114
e-value: 1.6E-20
score: 73.8
IPR017978GPCR family 3, C-terminalPROSITEPS50259G_PROTEIN_RECEP_F3_4coord: 1..119
score: 14.219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..200

Blast
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BLAST of TCONS_00019421-protein vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.235e-21
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 0 
Query:   14 CSCEYSTHFSTTMFVYKGALLILGSFLAWETKRVRVAALNDSQFIGMAVYNVFIVSVTTLIVYYAIENFKTYYYQAYVVVAAAILICSNVTVILVFVPKLILLFGRNKTLARALSVQTFSFSSSSKDQHSGSTNHLNSYG-GSTNQINSQGLSTNRMSVR 172
            C   + T +   ++ YKG L++ G FLAWET+ V + ALNDS++IGM+VYNV I+ +    V +   +        + +VA  I+ CS +T+ LVFVPKLI L  R    A A   + F F+ + K + S ++  + S    ST+++  +GL +    +R
Sbjct:  648 CENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQPNV---QFCIVALVIIFCSTITLCLVFVPKLITL--RTNPDA-ATQNRRFQFTQNQKKEDSKTSTSVTSVNQASTSRL--EGLQSENHRLR 799
The following BLAST results are available for this feature:
BLAST of TCONS_00019421-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABR25.235e-2135.00Gamma-aminobutyric acid type B receptor subunit 2 ... [more]
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