TCONS_00019402-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019402-protein
Unique Name	TCONS_00019402-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	522

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019402-protein ID=TCONS_00019402-protein|Name=TCONS_00019402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
TNTMGLRISMLILTLLLYIEVSIATGGSSHNKTKIFRQLLQKGYNKHVLP
SEHGEPVKVEVNMVIHDFVPRSPLSANSYSMDFLYRSRWKDHRLAFKHLL
EPGDDFVLEFGIQSVVDKIWVPGISFDNQIMNIETKVPQANIRMQFFSDG
GIRLSQRHQVELACKMDTGDFPFDRQFCDMRMLSYAYDKDHVDLQWEKSN
STHFQTVFGPQNTNMIRMRMKSYSLKSTVRTSMLGKDHHVLIATWKFSRN
VNYYILQLYLPCMLIVVLSWVGFWIDYRSVPARTALGIVTVLSMITFTNT
VHAESPPNGKSTLVNWYVLVSFIFVFLGIVEFAIVGITDKIWKQRIQRTI
KESSNVSQHRKNNHGLSPRSRRQSAYSQTPCESDHVDDLNVIFKRQLQQT
DSTARVNDLQPQMNRRNPRSNGMFLAPTGVALQELTKVHEYTQKWKAKAG
LKEKVHARLYEKQKFGKDDAHVLDQLARVIFPVCFVLFNIIYGVAVYFHR
QKDNLASEGFIAPKRLQWQDQN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010901	XLOC_010901	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019402	TCONS_00019402	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006028	GABAA/Glycine_rcpt
IPR006201	Neur_channel
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 254..274 score: 56.22 coord: 476..496 score: 40.33 coord: 280..301 score: 48.47 coord: 314..335 score: 36.69
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 118..129 score: 40.16 coord: 245..257 score: 25.93 coord: 80..96 score: 30.66 coord: 164..178 score: 49.14
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 33..231 e-value: 1.6E-32 score: 112.6
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 27..254 e-value: 7.6E-36 score: 123.0
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 31..210
None	No IPR available	GENE3D	1.20.58.390		coord: 255..504 e-value: 2.3E-41 score: 140.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..382
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 258..492 e-value: 8.2E-29 score: 101.2
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 253..498

Blast

[Close]

BLAST of TCONS_00019402-protein vs. Swiss-Prot (Human)
Match: GBRR3 (Gamma-aminobutyric acid receptor subunit rho-3 OS=Homo sapiens GN=GABRR3 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 3.808e-43
Identity = 128/479 (26.72%), Postives = 215/479 (44.89%), Query Frame = 0

Query:   20 EVSIATGGSSHNKTKIFRQLLQKGYNKHVL-PSEHGEPVKVEVNMVIHDFVPRSPLSANSYSMDFLYRSRWKDHRLAFKHLLEPGDDFVLEFGIQSVVDKIWVPGISFDNQIMNIETKVPQANIRMQFFSDGGIRLSQRHQVELACKMDTGDFPFDRQFCDMRMLSYAYDKDHVDLQWEKSNSTHFQTVFGPQNTNMIRMRMKSYSLKSTVRTSMLGKDHHVLIATWKFSRNVNYYILQLYLPCMLIVVLSWVGFWIDYRSVPARTALGIVTVLSMITFTNTVHAESPPNGKSTLVNWYVLVSFIFVFLGIVEFAIVGITDKIWKQRIQRTIKESSNVSQHRKNNHGLSPRSRRQSAYSQTPCESDHVDDLNVIFKRQLQQTDSTARVNDLQPQMNRRNPRSNGMFLAPTGVALQELTKVHEYTQKWKAKAGLKEKVHARLYEKQKFGKDDAHVLDQLARVIFPVCFVLFNIIY-GVAV 496
            E  +    S+  + + + QLL    N   + P   G PV V +++ +      S  + + ++M F  R  WKD RL+F         F        +  KIWVP I F +   +        NI ++   DG + LS R  V   C MD   FP D Q C + + SYAY++D + L W+  N    +++   ++ ++ +  ++ +S  S +        ++ L   +   R+V +++LQ Y P +L+V+LSWV FWID R+VPAR +LGI TVL+M T    V A  P       V+ Y+ VS +FVFL ++E+A V     + ++R Q   K++  +S+    +           A +   C  D   D++        QT  +    D   + +  +P ++                    + + K +  L   V   + E         HV+D  +R++FP+ ++LFN+ Y GV V
Sbjct:   45 ETRMKKDDSTKARPQKYEQLLHIEDNDFAMRPGFGGSPVPVGIDVHVESIDSISETNMD-FTMTFYLRHYWKDERLSFPSTANKSMTFD-----HRLTRKIWVPDIFFVHSKRSFIHDTTMENIMLRVHPDGNVLLSLRITVSAMCFMDFSRFPLDTQNCSLELESYAYNEDDLMLYWKHGN----KSLNTEEHMSLSQFFIEDFSASSGLAFYSSTGWYNRLFINFVLRRHVFFFVLQTYFPAILMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITAVSASMPQVSYLKAVDVYLWVSSLFVFLSVIEYAAVNYLTTV-EERKQ--FKKTGKISRMYNID--------AVQAMAFDGCYHDSEIDMD--------QTSLSLNSEDFMRRKSICSPSTD--------------------SSRIKRRKSLGGHVGRIILENN-------HVIDTYSRILFPIVYILFNLFYWGVYV 467

The following BLAST results are available for this feature:

BLAST of TCONS_00019402-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019402-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRR3	3.808e-43	26.72	Gamma-aminobutyric acid receptor subunit rho-3 OS=...	[more]

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TCONS_00019402-protein (polypeptide) - C. hemisphaerica