TCONS_00019321-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019321-protein
Unique NameTCONS_00019321-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019321-protein ID=TCONS_00019321-protein|Name=TCONS_00019321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
VMNLVDNCPKIVNIDQKDSDSDGYGDVCDNCPDVANPKQENTDGNAYGDV
CNSGNDRDRDGIPDEYDNCPQHSDTQHLDSDGDGKGDVCDDDDDNDGVKD
EDDNCRLISNQDQKDIDKNGIGDVCERDFDKDGTTHDDVCKMNGQIQHEI
FSSHSPSIILGNMDKESHPPPVWTTNDKGREVIQEINAAPAILLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010855XLOC_010855Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019321TCONS_00019321Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003367Thrombospondin_3-like_rpt
IPR028974TSP_type-3_rpt
IPR017897Thrombospondin_3_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003367Thrombospondin, type 3-like repeatPFAMPF02412TSP_3coord: 42..75
e-value: 7.9E-8
score: 31.8
coord: 79..113
e-value: 3.6E-9
score: 36.0
coord: 114..147
e-value: 2.6E-7
score: 30.1
coord: 16..39
e-value: 3.7E-4
score: 20.0
coord: 1..16
e-value: 0.032
score: 13.8
IPR028974TSP type-3 repeatGENE3D4.10.1080.10coord: 3..43
e-value: 6.2E-7
score: 28.7
coord: 44..151
e-value: 2.4E-24
score: 85.1
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 27..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..104
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 78..113
score: 17.261
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 17..39
score: 12.493
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 114..148
score: 9.824
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 40..77
score: 12.153
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 1..16
score: 8.011

Blast
[Close]
BLAST of TCONS_00019321-protein vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.265e-31
Identity = 85/199 (42.71%), Postives = 120/199 (60.30%), Query Frame = 0 
Query:    1 VMNLVDNCPKIVNIDQKDSDSDGYGDVCDNCPDVANPKQENTDGNAYGDVCNSGNDRDRDGIPDEYDNCPQHSDTQHLDSDGDGKGDVCDDDDDNDG----VKDEDDNCRLISNQDQKDIDKNGIGDVCERDFDKDGTTHD-DVCKMNGQIQHEIFSSHSPSIILGNMDKESHPPPVWTTNDKGREVIQEINAAPAILL 194
            + N +DNCPK+ N  Q D D DG GD CD+CP+++NP Q + D +  GDVC++  D D DG  D  DNCPQ  ++  LDSD DG GD CD DDDNDG    V    DNCRL+ N +QKD D NG+GDVCE DFD D      DVC  + ++    F ++   ++  + + ++   P W   ++G E++Q +N+ P + +
Sbjct:  571 IPNGLDNCPKVPNPLQTDRDEDGVGDACDSCPEMSNPTQTDADSDLVGDVCDTNEDSDGDGHQDTKDNCPQLPNSSQLDSDNDGLGDECDGDDDNDGIPDYVPPGPDNCRLVPNPNQKDSDGNGVGDVCEDDFDNDAVVDPLDVCPESAEVTLTDFRAYQTVVL--DPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAV 767
The following BLAST results are available for this feature:
BLAST of TCONS_00019321-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP31.265e-3142.71Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=... [more]
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