TCONS_00019291-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019291-protein
Unique NameTCONS_00019291-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length655

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019291-protein ID=TCONS_00019291-protein|Name=TCONS_00019291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=655bp
MSSPAGVEKCFEEAQDSGVLKVCHKGLKCFPNFVDEYDLLDVLNVDISKN
RFVELPQEVLSFVMMEKLVASHNFLKTLPDLSNLNALTYLDISQNQMQTI
PVHTCSLPLKILKASHNKITVIPCEIGLLSKLQSLDISCNELTNLPSTLG
DLTSLRMLNVRRNVIVSLPDELSKLKNLCNLNFSCNRISNIPPAFRLISS
LIELDLTNNPLSSPPAQICLKGRLHIVKFLSMAAQQQEKRWSTMLKDKAN
RSPSTNSLTTTNNDSEKHLTDKQLGNEVHDIMANGAIKEMDVLSDTLEKE
LVDSPTRSDSFTHKSELGMMSSSDGNVLLSPIKPKLPRKPEGLTLQENRE
KQRILQEKGKLTPQFKTRMPTPTFPTTDNQMVTSPTQGTMSLDRNVGRQV
GSQVKSKDSNEKLRSESLTEEEKLNNIAARKEQLLKNKEEIIKSRQRLEL
IKSKTSQRDNNMLSPGDKPELSSPNSTSSHTSSDSNQAGEVVFEGIAKRG
SLKQRNNKILKDGASNYTMRRFYDVAKEEFEKLEKLREAMESKLRIKLPD
DLPASLSDGIVLCHLINHLRKGTIQVIHVPSSGVPKLTMPKCQMNVDAFL
DACRRVGVEKVDVCTAPDILEEKSPIKLCRTVEALMQVMGVAPPQISIAK
PTTPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010829XLOC_010829Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019291TCONS_00019291Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 523..543
NoneNo IPR availableCOILSCoilCoilcoord: 421..451
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 152..171
e-value: 120.0
score: 5.5
coord: 66..81
e-value: 40.0
score: 9.1
coord: 106..125
e-value: 600.0
score: 0.2
coord: 84..103
e-value: 98.0
score: 6.1
coord: 129..148
e-value: 0.34
score: 20.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 452..489
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..420
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..324
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 532..635
e-value: 5.1E-11
score: 52.6
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 519..651
e-value: 1.1E-20
score: 73.4
IPR001715Calponin homology domainPFAMPF00307CHcoord: 548..638
e-value: 1.3E-11
score: 44.5
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 526..639
score: 11.831
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 527..639
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 129..151
e-value: 6.8
score: 14.6
coord: 198..221
e-value: 62.0
score: 6.8
coord: 152..174
e-value: 15.0
score: 11.9
coord: 84..107
e-value: 7.5
score: 14.3
coord: 175..197
e-value: 10.0
score: 13.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 10..353
e-value: 3.2E-38
score: 130.6
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 20..216
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 109..165
e-value: 1.9E-8
score: 33.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 200..221
score: 7.119
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 64..85
score: 6.565
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 131..153
score: 7.412
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 177..198
score: 7.989
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 86..107
score: 6.203
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 154..176
score: 6.572
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 108..129
score: 6.965

Blast
[Close]
BLAST of TCONS_00019291-protein vs. Swiss-Prot (Human)
Match: LRCH1 (Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Homo sapiens GN=LRCH1 PE=1 SV=3)

HSP 1 Score: 307.375 bits (786), Expect = 1.104e-94
Identity = 228/659 (34.60%), Postives = 351/659 (53.26%), Query Frame = 0 
Query:    6 GVEKCFEEAQDSGVLKVCHKGLKCFP-NFVDEYDLLDVLNVDISKNRFVELPQEVLSFVMMEKLVASHNFLKTLPD-LSNLNALTYLDISQNQMQTIPVHTCSLPLKILKASHNKITVIPCEIGLLSKLQSLDISCNELTNLPSTLGDLTSLRMLNVRRNVIVSLPDELSKLKNLCNLNFSCNRISNIPPAFRLISSLIELDLTNNPLSSPPAQICLKGRLHIVKFLSMAAQQQEKRWSTMLKDKANRSPSTNSLTTTNNDSEKHLTDKQLGNEVHDIMANGAIKEMDVLSDTLEKELVDSPTRSDSFTHKSELGMMSSSDGNVLLSPIKPKLPR--KPE----GLTLQENREKQRILQEKGKLTPQF---KTRMPTPTFPTTDNQMVTSPTQGTMSLDRNVGRQVGSQVKSKDSNEKLR-----SESLTEEEKLNNIAARKEQLLKNKEEIIKSRQRLELIKSKTSQRDNNMLSPGDKPELSSPNSTSSHTSSDSNQAGEVVFEGIAKRGSLKQRNNKILKDGASNYTMRRFYDVAKEEFEKLEKLREAMESKLRIKLPDDLPASLSDGIVLCHLINHLRKGTIQVIHVPSSGVPKLTMPKCQMNVDAFLDACRRVGVEKVDVCTAPDILE-EKSPIKLCRTVEALMQVMGVAPPQIS 647
            G+E+  EEA +SG L +  + LK FP      +DL D +  D+SKNR VE+P E+  FV +E L   HN ++ +P+ + NL  LTYL++S+NQ+  +P   C LPLK+L AS+NK+  +P EIG L +L  LD+SCNE+T LP  +G L SLR LNVRRN +  LP EL  L +L   +FSCN++  IP  FR +  L  L L NNPL SPPAQIC KG++HI K+LS+ A  Q K   ++      R      +     DS     D  +G++      NG  +    LS T E    D+ + +   ++  E   +   D    LSP+K +  +  +PE    G +     E+ +       L  +F   K R           + V   T+G +S  ++    +    + +++ + L+     S  +TE   LN       + L+ ++  +  + +LE       Q D  + S G +    SPN    ++ + S         G+  R S+  R  + L+     +T+RR  +  +EE E +E+LRE++E +L++ L +DL A+L DG+VLCHL+NH+R  ++  IHVPS  VPKL+M KC+ NV+ FL+ACR++GV + D+C+  DIL+ +   I+  +TV+ L+ +   APP  S
Sbjct:   62 GLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPQELVDL-SLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQAC-QIKTADSLYLHTMERPHLHQHVEDGKKDS-----DSGVGSD------NGDKR----LSAT-EPSDEDTVSLNVPMSNIMEEEQIIKEDSCHRLSPVKGEFHQEFQPEPSLLGDSTNSGEERDQFTDRADGLHSEFMNYKARAEDCEELLRIEEDVHWQTEGIISSSKDQDMDIAMIEQLREAVDLLQDPNGLSTDITERSVLNLYPMGSAEALELQDSALNGQIQLETSPVCEVQSDLTLQSNGSQ---YSPNEIRENSPAVSPTTNSTAPFGLKPR-SVFLRPQRNLESIDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVSLHEDLGAALMDGVVLCHLVNHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEADLCSPCDILQLDFRHIR--KTVDTLLALGEKAPPPTS 696
The following BLAST results are available for this feature:
BLAST of TCONS_00019291-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRCH11.104e-9434.60Leucine-rich repeat and calponin homology domain-c... [more]
back to top