TCONS_00019258-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019258-protein
Unique NameTCONS_00019258-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019258-protein ID=TCONS_00019258-protein|Name=TCONS_00019258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MANSRTVRCVKWLVFVFNLLFFLSGCCLIGFGVWLNVARDDWQGISEYAY
MSIANICLATGIIIVLVAFVGCCGAITENKIMLLLFFIFLLVIFLMEIGS
AISAYIWREKINEELKDQLEQRIPERYYTETAVELAVNKIQSHFKCCGLY
NSSDWGKTTASTNEPMIDQSCCIQDSAHSNYNSNCVSRPWGSIQADDEKL
LKEYYEDGCYDKIKDFIKENMWLSVLFGFIFAFIQIIGMVLSMFLYCVLR
RNEMVY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010811XLOC_010811Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019258TCONS_00019258Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR008952Tetraspanin_EC2
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 12..35
score: 39.8
coord: 77..105
score: 39.1
coord: 223..249
score: 27.97
coord: 50..76
score: 33.41
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 1..255
e-value: 4.3E-51
score: 171.4
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 105..221
e-value: 5.9E-17
score: 61.3
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 105..221
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 10..247
e-value: 7.5E-49
score: 166.4
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score: 5.0

Blast
[Close]
BLAST of TCONS_00019258-protein vs. Swiss-Prot (Human)
Match: TSN9 (Tetraspanin-9 OS=Homo sapiens GN=TSPAN9 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.858e-36
Identity = 84/251 (33.47%), Postives = 136/251 (54.18%), Query Frame = 0 
Query:    9 CVKWLVFVFNLLFFLSGCCLIGFGVWLNVARDDWQGISE-YAYMSIANICLATGIIIVLVAFVGCCGAITENKIMLLLFFIFLLVIFLMEIGSAISAYIWREKINEELKDQLEQRIPERYYTETAVEL--AVNKIQSHFKCCGLYNSSDWGKTTASTNEPMIDQSCCIQDSAHSNYNSNCVSRPWGSIQADDEKLLKEYYEDGCYDKIKDFIKENMWLSVLFGFIFAFIQIIGMVLSMFLYCVLRRNEMVY 256
            C+K+++F+FNL+F+L GC L+G G+WL+V++ ++   S  +  +S AN+ +A G I+++  F+GC GAI ENK +LL FFI LLVI L E+   I  +++ +K+NE  K  L++ +   Y+TE  V L  A N IQ+  +CCG+ + +DW         P     CC+++S     N+                     +  GCY+K+K +  +N  +    G     +QI+GM  SM L+  + R    Y
Sbjct:    8 CLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLKEGL-LLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENTVP---DRCCMENSQGCGRNAT-----------------TPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGKKY 237
The following BLAST results are available for this feature:
BLAST of TCONS_00019258-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN91.858e-3633.47Tetraspanin-9 OS=Homo sapiens GN=TSPAN9 PE=1 SV=1[more]
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