TCONS_00019245-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019245-protein
Unique NameTCONS_00019245-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019245-protein ID=TCONS_00019245-protein|Name=TCONS_00019245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=781bp
MFNIAVQPEKIVDCSIQNDVYCYHIRWCDSWVSHDSLPDSWQYLVDDFWK
KQTEQQIQEPLQNQDDPNRLIHSMNTKFLPHFSTLLVGESEVNSQQQNLI
STQSPSDTLGPLEPPALFTTAQPLGSLSTQQATFTLTAASLRDNQLDISG
VGDFQIPLFEQTSQPAALQLIHQPTQQIEISSISNTDEQTTSATTDHQPS
KTTVKIERRKKEPAKTTKFTLTTKTNKQTTCEECSRDFSKTSNPRKRLRE
HIRRVHLKNGKFHCTDCPKTFVCSQGLRDHEPVHSKERKHSCTYCGQTFL
RSSHLYIHTRTHEEEKNFSCEGCVFTCNVQSELKEHCENTHSDITIDIKC
SVCKQNLFSSQSIYSHSLRHSGSRDWKCDVCGSAFKRKQILDQHMKRHSK
DRNMFSCDNCSKDFTTRSTLKQHLYIVHNRTIDGAEHKCEVCGKCFKNWA
NYNRHVGLHPKVNDTSLNNVERDEGGQAKDFNTSGTDDFTCNVCKSHHDT
LSQLLEHLQQHQVEEQNGVETSLKDSKERKCDTCQKSFKNENNLKKHLEI
HGTLELKCDICYVVFKRRDTLRVHKKRHLERNEKPEDFDGVKHDISVNER
LKELRAQIGQPDQSGNIACPYCGKGFNKRNLLLSHIVIHSDISFTCDTCG
KAYKQRSYLTKHKRSHHLGVTTKRGRPAGQVKTQLKGKYKCDTCVFECSS
IKLLKEHKASHKPLRIDCKDCNLVFICQDDFQVHIRQAHSNKKRLQLSPP
SEEVRIVSVDVDSEHVIQENLVDDLIITMRD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010800XLOC_010800Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019245TCONS_00019245Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 556..578
e-value: 0.031
score: 23.4
coord: 376..398
e-value: 0.005
score: 26.0
coord: 489..511
e-value: 1.3
score: 18.0
coord: 716..739
e-value: 1.3
score: 18.1
coord: 689..711
e-value: 0.32
score: 20.1
coord: 617..639
e-value: 0.021
score: 24.0
coord: 290..312
e-value: 0.21
score: 20.7
coord: 644..666
e-value: 0.004
score: 26.4
coord: 529..551
e-value: 0.0054
score: 26.0
coord: 348..370
e-value: 17.0
score: 11.3
coord: 405..428
e-value: 0.0058
score: 25.8
coord: 318..341
e-value: 5.1
score: 15.9
coord: 262..284
e-value: 2.7
score: 17.0
coord: 437..459
e-value: 0.0014
score: 27.9
coord: 229..256
e-value: 24.0
score: 9.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 646..667
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 718..739
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 531..551
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 691..711
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 407..428
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 292..312
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 439..459
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 350..370
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 558..578
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 264..284
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 320..341
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 378..398
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 405..428
score: 11.385
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 348..375
score: 8.767
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 437..459
score: 9.66
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 716..744
score: 9.681
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 644..672
score: 12.57
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 262..289
score: 12.196
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 617..640
score: 10.471
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 529..551
score: 10.699
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 376..403
score: 12.279
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 290..317
score: 13.235
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 556..585
score: 10.034
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 370..423
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 284..336
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 248..299
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 437..511
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 529..578
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 618..666
NoneNo IPR availableGENE3D3.30.160.60coord: 510..540
e-value: 7.1E-5
score: 22.3
NoneNo IPR availableGENE3D2.20.28.30coord: 161..243
e-value: 0.085
score: 12.7
NoneNo IPR availableGENE3D3.30.160.60coord: 378..391
e-value: 2.2E-6
score: 27.1
coord: 291..304
e-value: 5.5E-7
score: 29.0
coord: 590..629
e-value: 6.4E-4
score: 19.2
NoneNo IPR availableGENE3D3.30.160.60coord: 653..677
e-value: 6.8E-6
score: 25.5
coord: 566..589
e-value: 0.03
score: 13.8
NoneNo IPR availableGENE3D2.20.28.30coord: 244..272
e-value: 9.2E-5
score: 22.1
NoneNo IPR availableGENE3D3.30.60.20coord: 338..377
e-value: 0.012
score: 15.0
NoneNo IPR availableGENE3D3.30.160.60coord: 725..744
e-value: 0.08
score: 12.5
NoneNo IPR availableGENE3D3.30.160.60coord: 273..290
e-value: 1.1E-7
score: 31.6
coord: 451..509
e-value: 3.0E-8
score: 33.4
coord: 392..421
e-value: 1.7E-12
score: 47.1
coord: 305..337
e-value: 2.7E-10
score: 40.0
NoneNo IPR availableGENE3D3.30.160.60coord: 541..565
e-value: 7.7E-9
score: 35.3
coord: 687..724
e-value: 0.0016
score: 18.3
coord: 630..652
e-value: 8.5E-13
score: 48.0
NoneNo IPR availableGENE3D3.30.160.60coord: 422..450
e-value: 3.2E-6
score: 26.6
NoneNo IPR availableGENE3D2.40.50.40coord: 5..61
e-value: 7.2E-4
score: 18.8
NoneNo IPR availablePFAMPF12874zf-metcoord: 530..549
e-value: 4.9E-4
score: 20.3
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 557..578
e-value: 0.0047
score: 17.2
coord: 405..428
e-value: 0.0023
score: 18.2
coord: 644..666
e-value: 2.3E-4
score: 21.3
coord: 619..639
e-value: 0.0032
score: 17.8
coord: 437..459
e-value: 2.9E-4
score: 21.0
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 6..52

Blast
BLAST of TCONS_00019245-protein vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 4.568e-43
Identity = 138/471 (29.30%), Postives = 205/471 (43.52%), Query Frame = 0
Query:  227 KQTTCEECSRDFSKTSNPRKRLREHIRRVHLKNGKFHCTDCPKTFVCSQGLRDHEPVHSKERKHSCTYCGQTFLRSSHLYIHTRTHEEEKNFSCEGCVFTCNVQSELKEHCENTHSDITIDIKCSVCKQNLFSSQSIYSHSLRHSGSRDWKCDVCGSAFKRKQILDQHMKRHSKDRNMFSCDNCSKDFTTRSTLKQH-----------------------LYIVHNRTIDGAE-HKCEVCGKCFKNWA-NYNRHVGLHPKVNDTSLNNVERDEGGQAKDFNTSGTDDFTCNVCKSHHDTLSQLLEHLQQHQVEEQNGVETSLKDSKERKCDTCQKSFKNENNLKKHLEIH-GTLELKCDICYVVFKRRDTLRVHKKRHLERNEKPEDFDGVKHDISVNERL-KELRAQIGQPDQSGNIACPYCGKGFNKRNLLLSHIVIHS-DISFTCDTCGKAYKQRSYLTKHKRSHHLG 669
            K+  C EC + FS++SN    L+ H +RVH     + C +C K+F  S  L  H P+H+ E+ + C  CG+ F RS+ L IH R H  EK + CE C      +S L+ H E  H+      KC  C +    S ++++H   H+  + +KCD CG  F     L  H + H+ ++  + C+ C K F++ S+ + H                        +  H R   G + +KCEVCGK F NW+ N + H  +H                        +G   + C  C       S L  H   H  E            K  KCD CQK F   ++L+ H  +H G    KCD C   F +R  L+VH+  H    EKP   +    + S +  L    R   G+        C  CGKGF++ +   +H  +H+ +  + CD C K + QRS+L  H+R H  G
Sbjct:  317 KRYWCHECGKGFSQSSN----LQTH-QRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAH-ERIHTG-EKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEK-PYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRF-NWSLNLHNHQRVH------------------------TGEKPYKCEECGKGFSQASNLQAHQSVHTGE------------KPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHT--GEKPFKCEECGKEFSWSAGLSAHQRVHTGEKP----YTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTGG 736          

HSP 2 Score: 138.658 bits (348), Expect = 8.847e-34
Identity = 128/467 (27.41%), Postives = 192/467 (41.11%), Query Frame = 0
Query:  224 KTNKQTTCEECSRDFSKTSNPRKRLREHIRRVHLKNGKFHCTDCPKTFVCSQGLRDHEPVHSKERKHSCTYCGQTFLRSSHLYIHTRTHEEEKNFSCEGCVFTCNVQSELKEHCENTHSDITIDIKCSVCKQNLFSSQSIYSHSLRHSGSRDWKCDVCGSAFKRKQILDQHMKRHSKDRNMFSCDNCSKDFTTRSTLKQHLYIVHNRTIDGAEHKCEVCGKCFK---NWANYNR-HVGLHPKVNDTSLNNVERDEGGQAKDFNTSGTDDFTCNVCKSHHDTLSQLLEHLQQHQVEEQNGVETSLK----------------DSKERKCDTCQKSFKNENNLKKHLEIH-GTLELKCDICYVVFKRRDTLRVHKKRHLERNEKPEDFDGVKHDISVNERLKELRAQIGQPDQSGN--IACPYCGKGFNKRNLLLSHIVIHS-DISFTCDTCGKAYKQRSYLTKHKRSH 666
            KT +   CEE   D S          E  ++VHL      C+   K    S G+   + V + ++++ C  CG+ F +SS+L  H R H  EK ++C  C  + N  S L  H    H+      +C  C +    S  +  H   H+G + +KC+VCG  F ++  L  H + H+ ++  + C +C K F+  S L  H  +      +   +KC+ CGKCF    N  ++ R H G  P   +            Q+     +G   F CNVC       S    H + H  E+    E   K                  K  KC+ C K F   +NL+ H  +H G    KCD C   F +   L+ H++ H    EKP   D      S    L     Q+ Q   +G     C  CGK F+    L +H  +H+ +  +TC  CGK + Q S+   H+R H
Sbjct:  261 KTYQGNECEEAFNDSSSL--------ELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLP-IHTG-EKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEK-PYKCGDCGKRFSCSSNLHTHQRV----HTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHT--GEKPYKCDTCGKAFSQRSNL-----QVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVH 705          

HSP 3 Score: 125.561 bits (314), Expect = 1.350e-29
Identity = 99/363 (27.27%), Postives = 152/363 (41.87%), Query Frame = 0
Query:  227 KQTTCEECSRDFSKTSNPRKRLREHIRRVHLKNGKFHCTDCPKTFVCSQGLRDHEPVHSKERKHSCTYCGQTFLRSSHLYIHTRTHEEEKNFSCEGCVFTCNVQSELKEHCENTHSDITIDIKCSVCKQNLFSSQSIYSHSLRHSGSRDWKCDVCGSAFKRKQILDQHMKRHSKDRNMFSCDNCSKDFTTRSTLKQHLYIVHNRTIDGAE--HKCEVCGKCFKNWANYNRHVGLH----PKVNDTSLNNVERDEGGQAKDFNTSGTDDFTCNVCKSHHDTLSQLLEHLQQHQVEEQNGVETSLKDSKERKCDTCQKSFKNENNLKKHLEIH-GTLELKCDICYVVFKRRDTLRVHKKRHLERN 582
            K   CE C + F++    R  L+ H  R+H     + C DC K F CS  L  H+ VH++E+ + C  CG+ F  S +L+ H R H  EK + CE C    +  S  + H +  H+      +C+VC +    S    +H   H+G + +KC+VCG  F     L  H + H+ ++  + C+ C K F+  S L+ H      +++   E   KC+ C K F   ++   H  +H    P   DT      +    Q      +G   F C  C       + L  H + H  E            K   C  C K F   ++   H  +H G     CD+C   F +R  L  H++ H   N
Sbjct:  401 KPYKCEVCGKGFTQ----RSHLQAH-ERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSH-QRVHTG-EKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEK-PYKCEECGKGFSQASNLQAH------QSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGE------------KPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTGGN 737          
The following BLAST results are available for this feature:
BLAST of TCONS_00019245-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2354.568e-4329.30Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 ... [more]
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