TCONS_00019211-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019211-protein
Unique Name	TCONS_00019211-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1874

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019211-protein ID=TCONS_00019211-protein|Name=TCONS_00019211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1874bp
LEKKKKNCIKMKRRNEDTNGVETIDKKSKTESTSDVTNLVASLIERLKED
QNTLPGLKEFAKQCHKEDVNHTFVSMYLKNSPECKDLFALFEVVGRPEPE
KLELIWEAFEGILSVTSQNKDDRLMHSSAIFLINKIIQNHMKLLYSSLST
ASKDSLTKAALKLMTYMIAQDSQLLRDIALTFDFSLKGFRAASHRRNRKV
KPDVRTCFLRFCLAFFAFGDITIIIKLLEEKGLGALILNDLHQDSVDSIL
AVIQTLQSKVVEDEKIMKKTKLVFFNASVMSKLTTLVKNPVPDIRQAALS
IITVLTTDTKCGICFFPKENESITKLLNPVLLKYLQYIKASLLSNQSLGD
LAVNILEKSKDLIVPFMSNLNLQMEVRPSESWFSNMKFITELWKKIPLIS
NINESETTTPASLTNDFNFWLKLIIPPTIKKSHMITALKSKHVKVQMAIL
DLLDIILKRCMDMKQLLTQHKCSEDVLDSTKNNLLHELPEVNHFVTLRQN
LILRKNGKEETANEKTPVLEDKAVQATEEERLNLLFSTTKMLSYYQQIKN
SCITESGYNICKLLLEESIMGNDGIAETVLDVMLLEDGDNTRMWLEKKLP
GGVNVIQLTLDIIVKFQQNDDVVKRGRQLLFKILNAIECLQTHSDEVDIW
ISTLLSMKTGDEEEIEKGKKCQNEINRFFSNALFKLLNDPYKHQQEVDNI
LKESRNMDVEEGEEKPFTPIAMILVRIFKKTTATDVSYDFLKLACKQILF
CQQSPLPFTKLLVKECDDEKYGDLLAFAKQLLHCLKLNDSFVDELNTIVT
SEDTRTDSSNNLVDFMQDSLQLSSQTTNKSEFKKKLKSLLSAIDNDETFI
NINQTTLSNILYCLVKILFYIEVPSKSVENFSKVLEIIADQIESVLTTQN
ESTQQFSSILVKLYNETLSSPNTESWQIFSRRLLKACLAVLQDGQILSDM
LDKILNNLKDKNIEILESIVPSLNEESVTKVFKVLVEMIFATGFNNLKTE
TIEIVIRISNVLPANRTTSFKQILNEKQITELFKYAVEGQNQLLVELCYK
LYFLSPTIALVNDTDSLQQLMATKHQAFMELLLKTNLQFRQLFIACIGKS
DIVINEQSIDLLSPLLYITLKLTVAEDLPEDFTPKMIVDTWNHIFSAGRK
VQYQDIRLLDETAHLQSNERFNQVVLHLLSNLQNNDDINVVKAALAFIND
HLTKTDESFRIYLVGELITNFLHYKDDSKLQEMFAGSLVKTLENFSYSLT
LKRKFSLVGHWKTFVVEILKKHFTNTKYMDLLSSAIKKLYGTFSSTFETK
TGVSLKDLHNMVVSHSKFLALLIDEDNQHAPIKDALVSLLLCITEQCSDV
CNFSFSSLLYMAYSATLSKRDQNILALLKIYEVNGCMNQSPTMWGQQAIE
AYKEKTDSNALAKEISSYRILSKLDAKKTFKSAIKFPVHLKLNENYACGE
EEEEELYDPRFLLMLFSFILRPGNNVDCKHFLESNCLAVTIASLTSHDIS
IRKIGYVVIAQYNEFLEGARFREKAQVDYMMMLLKHSIFEEHMMLPSVWA
VLVIRYLSLLSHPDQYFYSLLNHQLLRKPIMYVKDIPFIFVQFLHSNTLE
HQSERAWILKLLLNGLKDDYAYYMYKKNQVFELATSLYDSGISDKKSKAL
ILDLIKRACSINHAVFDLVLKNGLLSWINLQLEKHSSPENKGKFIDILDT
LACTLEKEHKKETGQSQTSVPRQLPIEMLTICCNCLNDHKSLAKESLTKL
CHILNWLLHLPNHFGNLVTTLNLEEKKRILSLFESNIIDGDENEKVENFK
TFAKVLIKLLKKSDAGGLLEDFSWTNLKKNLPEVDQGFTGDVSLDVLGVC
KKQPFEMKFVNQFLLSDYVIQCQH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010788	XLOC_010788	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019211	TCONS_00019211	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR032436	NopRA1_C
IPR021714	Npa1_N
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 3..362 e-value: 3.8E-5 score: 22.4
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1157..1834 e-value: 7.1E-4 score: 17.8
IPR032436	Nucleolar pre-ribosomal-associated protein 1, C-terminal domain	PFAM	PF16201	NopRA1	coord: 1487..1677 e-value: 5.5E-41 score: 140.2
IPR021714	Nucleolar pre-ribosomal-associated protein 1, N-terminal	PFAM	PF11707	Npa1	coord: 84..385 e-value: 2.8E-52 score: 178.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 1465..1504 coord: 1550..1760
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 840..1014 coord: 117..366 coord: 1166..1216 coord: 434..492

Blast

[Close]

BLAST of TCONS_00019211-protein vs. Swiss-Prot (Human)
Match: NPA1P (Nucleolar pre-ribosomal-associated protein 1 OS=Homo sapiens GN=URB1 PE=1 SV=4)

HSP 1 Score: 225.713 bits (574), Expect = 5.563e-59
Identity = 137/439 (31.21%), Postives = 242/439 (55.13%), Query Frame = 0

Query: 1259 GHWKTFVVEILKKHFTNTKYMDLLSSAIKKLYGTFSSTFETKTGVSLKDLHNMVVSHSKFLALLIDEDNQHAP---IKDALVSLLLCITEQCSDVCNFSFSSLLYMAYSATLSKRDQNILALLKIYEVN--GCMNQSPTMWGQQAIEAYKE-KTDSNALAKEISSYRILSKLDAKKTFKSAIKFPVHLKLNENYACGEEEEEEL-------------YDPRFLLMLFSFILRPGNNVDCKHFLESNCLAVTIASLTSHDISIRKIGYVVIAQYNEFLEGARFREKAQVDYMMMLLKHSIFEEHMMLPSVWAVLVIRYLSLLSHPDQYFYSLLNHQLLRKPIMYVKDIPFIFVQFLHSNTLEHQSERAWILKLLLNGLKDDYAYYMYKKNQVFELATSLYDSGISDKKSKALILDLIKRACSINHAVFDLVLKNGLLSWI 1678
            G W+ FV + LK  + +  ++ +L +A++ LY   SS   TK  + L  ++ M++ HS FL  L+  D + +P   +K+ALV L+L + E C  VC  S  ++L  AY ATLS  DQ IL LL+ YE N    +N    +WG  A+E +K  ++   +L ++ S   IL  LD  +  ++ + FP + +L        E+ +EL             YDP FLL LFS + RP   VDC+ FL+SN L +T+ +L+S+D  +R I Y V+A Y   LEGARF+E++Q+ Y++ ++++ I  + M L    A+ + +    +  P+++ Y  +++ LL    + +  +P  F QF +S+  E ++E+ W+  +L  G++D   Y +  +  +F +  S + S + D+ ++  IL++++ A  +  + ++++    LL+WI
Sbjct: 1428 GDWQKFVKKGLKFRYQDHTFLKMLLTAVQLLYSPESSV-RTKL-IQLPVVYVMLMQHSLFLPTLLTSDGEESPDSQVKEALVDLMLTVVEMCPSVCESSHFAVLLGAYGATLSVLDQKILLLLRAYEQNKLSLINFRVLLWGPAAVEHHKTCRSLGRSLWQQPSVGDILRLLDRDRMMQTILHFPQNRRL-----LPPEDTQELIFKDKSRVDLDGLYDPCFLLQLFSELTRPEFVVDCRKFLDSNALGLTVTALSSYDPQMRAIAYHVLAAYYSHLEGARFQEQSQLLYLLDVVRNGIRTQDMRLTFTLALFIAKAALQILKPEEHMYLKVSNFLLSHEYLNMDKVPG-FYQFFYSSDFEQKTEQKWVFGVLRQGIRDKQCYELCARRGIFHIILSFFHSPLCDEAAQNWILEILQNAAQVARSAYEIIRDYSLLTWI 1858

HSP 2 Score: 154.836 bits (390), Expect = 2.488e-37
Identity = 150/574 (26.13%), Postives = 264/574 (45.99%), Query Frame = 0

Query:   46 RLKEDQNTLPGLKEF---AKQCHKEDVNHTFVSMYLKNSPECKDLFALFEVVGRPEPEKLELIWEAFEGILSVTSQNKDDRLMHSSAIFLINKIIQNHMKLLYSSLSTASKDSLTKAALKLMTYMIAQDSQLLRDIALTFDFSLKGFRAASHRRNRKVKPDVRTCFLRFCLAFFAFGDITIIIKLLEEKGLGALIL-NDLHQDSVDSILAVIQTLQSKVVEDEKIMKKTKLVFFNASVMSKLTTLVK-NPVPD-----------------IRQAALSIITVLTTDTKCGICFFPKENESITKLLNPVLLKYLQYIKASLLSNQSLGDLAVNILEKSKDLIVPFMSNLNLQMEVRPSESWFSNMKFITELWKKIPLISNINESETTTPASLTNDFNFWLKLIIPPTIKKSHMITALKSKHVKVQMAILDLLDIILKRCMDM------KQLLTQHKCSEDVLDSTKNNLLHE-----LPEVNHFVTLRQNLILRKNGKEETANEK---TPVLEDKAVQATEEERLNLLFSTTKMLSYYQQIKNSCITESGYNICKLLLEESIMGNDGIAETVLDVM 583
            +LK+ Q   PGL+ F   AK+  +EDV +  V  Y+K S EC ++F L     RPE E + LI++ FE IL  T+   D    H     ++ K++ NHMKL+  SL  AS   L +A L LMT M+ Q  +  RD+   FD + K       +R+ K   DVR  +++F L+F   GD + I+++LE K     I  + + +D + +I  ++ TL++KVV ++ I K  K+ FF   +++ + +L   N + D                 +R+   + +  L    K GI F+     +  +  N  LL +L  +K +   +  + DL VNIL+   DL+  +   +      R   +W +N+K + ++++  P IS   ++    P  L       +   +P    KS    AL      V+   L L+ +ILKR +        K++  +      V+      L  E     LP++N  V + Q+L  ++  +++   +K    P     A Q  + E + L     +++  YQ++    + +  ++  KLL  + ++   G+ E V  ++
Sbjct:   38 QLKDPQGPGPGLEAFVSAAKKLPREDV-YDVVEGYIKISVECVEIFQLLSGEKRPESETM-LIFQVFEAILLRTA--SDLSHFHVVGTNIVKKLMNNHMKLICESL-YASGYRLARACLSLMTAMVTQGPEAARDVCSHFDLNKKTLYTLVTKRDSKGVYDVRQAYVQFALSFLIAGDDSTIVQVLEVKEFIPCIFSSGIKEDRISTINILLSTLKTKVVHNKNITKTQKVRFFTGQLLNHIASLYNWNGITDVNPENVKVSAEEAGKTMVRELVHNFLMDLCCSLKHGINFYDASLGTFGRGGNLTLLHFLLGLKTA-ADDDLVADLVVNILKVCPDLLNKYFKEVTFSFIPRAKSTWLNNIKLLNKIYEAQPEISRAFQTREFIP--LPRLLAMVMVTTVPLVCNKSMFTQALNLDSTSVRHTALSLISVILKRALKTVDHCLNKEVWQESGVYTAVMMEEFVQLFREALSKILPDLNTVVWVWQSLKKQETKQDDKKGQKRSDGPPAACDAHQCDDAETILLKAVLLQVICLYQKVVPHVVMQYNFDFSKLL--KGVISEQGLREEVPPIL 601

The following BLAST results are available for this feature:

BLAST of TCONS_00019211-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019211-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPA1P	5.563e-59	31.21	Nucleolar pre-ribosomal-associated protein 1 OS=Ho...	[more]

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TCONS_00019211-protein (polypeptide) - C. hemisphaerica