TCONS_00019178-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019178-protein
Unique NameTCONS_00019178-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019178-protein ID=TCONS_00019178-protein|Name=TCONS_00019178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MDFKPPVLKEYISTSPPYIKHRSTPDSVESNDPKHTIIPNDDDAHRQSPI
VFIDNEEKHFIKRSPKDFVDRRLLPGAAPLPLKYKASKAYHLQTSTMGPL
WCTSSCCSDQRKPTAAEFFFPPSGHGQRYPSTHMTSPVPLVSPYPYPSPP
YRSPKEPQPLTPSSPTSSNSPIPFSQEQISKVCETLEECGDIERLSRFLW
SLPTTPDVRDVMNSSETVLRAKALVAFHNHHFHELYYILEHFRFGKKSHG
KLQAMWLEAHYMEAERLRGRPLGPVDKYRVRKRFPLPRTIWDGEQKTHCF
KERTRKLLREFYLQDPYPSPSKKRDLAEATHLTPTQVGNWFKNRRQRDRA
AAAKHKNQRQEMNMQHSFEDDDDSDTFENILDNDEQDSDSEHSTDNRKTL
QSNPDSDKLKAVINHRLFSDPNMVKSVPILTPKPTTNSHSTFMMSDILKK
TSSTPPTANMVLKPYLHNKPNLFVHTR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010764XLOC_010764Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019178TCONS_00019178Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR031701SIX1_SD
IPR014710RmlC-like_jellyroll
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 294..355
e-value: 2.0E-13
score: 60.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 299..349
e-value: 1.7E-12
score: 46.9
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 291..351
score: 14.366
IPR031701Homeobox protein SIX1, N-terminal SD domainPFAMPF16878SIX1_SDcoord: 174..288
e-value: 1.8E-43
score: 147.5
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 169..251
e-value: 0.019
score: 14.3
NoneNo IPR availableGENE3D1.10.10.60coord: 276..359
e-value: 3.0E-15
score: 55.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..408
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..43
NoneNo IPR availableCDDcd00086homeodomaincoord: 295..343
e-value: 3.41277E-10
score: 54.9421
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 291..355

Blast
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BLAST of TCONS_00019178-protein vs. Swiss-Prot (Human)
Match: SIX6 (Homeobox protein SIX6 OS=Homo sapiens GN=SIX6 PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 4.068e-96
Identity = 140/192 (72.92%), Postives = 169/192 (88.02%), Query Frame = 0 
Query:  172 IPFSQEQISKVCETLEECGDIERLSRFLWSLPTTPDVRDVMNSSETVLRAKALVAFHNHHFHELYYILEHFRFGKKSHGKLQAMWLEAHYMEAERLRGRPLGPVDKYRVRKRFPLPRTIWDGEQKTHCFKERTRKLLREFYLQDPYPSPSKKRDLAEATHLTPTQVGNWFKNRRQRDRAAAAKHKNQRQEMN 363
            + FS +Q++ VCETLEE GD+ERL RFLWSLP  P   + +N +E+VLRA+A+VAFH  ++ ELY+ILE+ +F K+SH KLQA+WLEAHY EAE+LRGRPLGPVDKYRVRK+FPLPRTIWDGEQKTHCFKERTR LLRE+YLQDPYP+PSKKR+LA+AT LTPTQVGNWFKNRRQRDRAAAAK++ Q+Q ++
Sbjct:    7 LNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLS 198
The following BLAST results are available for this feature:
BLAST of TCONS_00019178-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX64.068e-9672.92Homeobox protein SIX6 OS=Homo sapiens GN=SIX6 PE=1... [more]
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