TCONS_00019095-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019095-protein
Unique Name	TCONS_00019095-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	345

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019095-protein ID=TCONS_00019095-protein|Name=TCONS_00019095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MKKEGANDVGEFSVPEVGFFEGTEKLLEVWFTSNLEDGLTNNNNNGDLRI
IPREKLDQLLGIVDAEIISVDKNEFIDSYVLSESSMFISSNRFIIKTCGI
TKLLFAVQPLINIVQRFTGMKLMNFFYSRRVYLKPENQIGIHQTFNSEVE
YLQKIVPDGSPYIIGSKQTEQWYLFTSDNVSDFIESDDVTLEILMSDMDE
TAMVEFTKLKNESSADVIKNSGIEKILPGSINDGCLFNPIGFSLNGLNKE
AYYTIHVTPQPSCSYVSFETNIKKESYDHIVNKVLDIFKPNKFIITLFST
KGSQCGDAGEVLKKVSLNNYACADECSQQLKNYTLAYRAYCKQPN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010709	XLOC_010709	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019095	TCONS_00019095	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001985	S-AdoMet_decarboxylase
IPR016067	S-AdoMet_deCO2ase_core
IPR018166	S-AdoMet_deCO2ase_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006597	spermine biosynthetic process
GO:0008295	spermidine biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004014	adenosylmethionine decarboxylase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0006597	spermine biosynthetic process
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001985	S-adenosylmethionine decarboxylase	PIRSF	PIRSF001355	SAM_decarbox_euk	coord: 5..345 e-value: 1.2E-108 score: 361.1
IPR001985	S-adenosylmethionine decarboxylase	PFAM	PF01536	SAM_decarbox	coord: 19..340 e-value: 8.9E-103 score: 343.9
IPR001985	S-adenosylmethionine decarboxylase	TIGRFAM	TIGR00535	TIGR00535	coord: 20..343 e-value: 1.6E-84 score: 281.7
IPR016067	S-adenosylmethionine decarboxylase, core	GENE3D	3.60.90.10		coord: 14..345 e-value: 1.5E-105 score: 352.3
IPR016067	S-adenosylmethionine decarboxylase, core	SUPERFAMILY	56276	S-adenosylmethionine decarboxylase	coord: 19..340
IPR018166	S-adenosylmethionine decarboxylase, conserved site	PROSITE	PS01336	ADOMETDC	coord: 78..88

Blast

[Close]

BLAST of TCONS_00019095-protein vs. Swiss-Prot (Human)
Match: DCAM (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 5.982e-87
Identity = 142/328 (43.29%), Postives = 206/328 (62.80%), Query Frame = 0

Query:   19 FFEGTEKLLEVWFTSNLEDGLTNNNNNGDLRIIPREKLDQLLGIVDAEIISVDKNEFIDSYVLSESSMFISSNRFIIKTCGITKLLFAVQPLINIVQRFTGM-KLMNFFYSRRVYLKPENQIGIHQTFNSEVEYLQKIVPDGSPYIIGSKQTEQWYLFTSD-NVSDFIESDDVTLEILMSDMDETAMVEFTKLKNESSADVIKNSGIEKILPGSINDGCLFNPIGFSLNGLNKEA-YYTIHVTPQPSCSYVSFETNIKKESYDHIVNKVLDIFKPNKFIITLFSTKGSQCGDAGEVLKKVSLNNYACADECSQQLKNYTLAYRAYCKQ 343
            FFEGTEKLLEVWF+    D    N  +GDLR IPR + D LL  V   IISV K +  ++YVLSESSMF+S  RFI+KTCG T LL A+ PL+ + + ++G   + +FFYSR+ ++KP +Q   H+ F  E+E+L  I P+G+ Y +G   ++ WYL+T D   S  I   D TLEILMS++D   M +F      ++ DV + SGI  ++PGS+ D  +FNP G+S+NG+  +  Y+TIH+TP+P  SYVSFETN+ + SYD ++ KV+++FKP KF+ TLF  + S+C       +K+    +   D  S    +Y   + ++ K+
Sbjct:    6 FFEGTEKLLEVWFSRQQPDA---NQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKI--EGFKRLDCQSAMFNDYNFVFTSFAKK 328

The following BLAST results are available for this feature:

BLAST of TCONS_00019095-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019095-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCAM	5.982e-87	43.29	S-adenosylmethionine decarboxylase proenzyme OS=Ho...	[more]

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TCONS_00019095-protein (polypeptide) - C. hemisphaerica