TCONS_00018972-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018972-protein
Unique NameTCONS_00018972-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018972-protein ID=TCONS_00018972-protein|Name=TCONS_00018972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MKDRLAQLRDLQVQSDLPPEYEETNLSEEDKTNPFLNDFFSQIEVIQQDI
RDIQDNVQEIKKKQSAILSAPQSGDKMKEELEQFMADITRSANRVKQILK
GMEKSIKDQENSNQGNFADIRIKKCQHAALSREFVEVMTEYNKIQNDYRD
KCKNRIKRQLEITNTEKSYTDEEVEEMIESKNPAIFTQGIITDTQQAKQS
LREIEARHNDIIKLETSIRELHEMFTDMAILVQSQGEMIDRIEYNVEQAA
EYVQRAVVDTKKAVRYQSKARRKKIMIAICLAVMLAPPMNIRMHKLWKVI
RSTSEWLRMITTISILCDLQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010637XLOC_010637Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018972TCONS_00018972Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006011Syntaxin_N
IPR000727T_SNARE_dom
IPR006012Syntaxin/epimorphin_CS
IPR010989SNARE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Molecular Function
TermDefinition
GO:0005484SNAP receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
molecular_function GO:0005484 SNAP receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
NoneNo IPR availableCOILSCoilCoilcoord: 92..112
NoneNo IPR availableGENE3D1.20.5.110coord: 223..267
e-value: 1.7E-19
score: 69.2
NoneNo IPR availableGENE3D1.20.58.70coord: 35..222
e-value: 4.2E-50
score: 169.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableCDDcd00179SynNcoord: 36..190
e-value: 2.7391E-42
score: 143.964
NoneNo IPR availableCDDcd15880SNARE_syntaxin1coord: 200..268
e-value: 8.85427E-33
score: 116.456
IPR006011Syntaxin, N-terminal domainSMARTSM00503SynN_4coord: 31..153
e-value: 3.7E-27
score: 106.2
IPR006011Syntaxin, N-terminal domainPFAMPF00804Syntaxincoord: 36..236
e-value: 1.3E-56
score: 191.4
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 196..263
e-value: 6.0E-21
score: 85.6
IPR000727Target SNARE coiled-coil homology domainPFAMPF05739SNAREcoord: 237..285
e-value: 3.4E-17
score: 62.1
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 201..263
score: 18.842
IPR006012Syntaxin/epimorphin, conserved sitePROSITEPS00914SYNTAXINcoord: 207..246
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 34..256

Blast
[Close]
BLAST of TCONS_00018972-protein vs. Swiss-Prot (Human)
Match: STX1B (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.137e-103
Identity = 161/293 (54.95%), Postives = 217/293 (74.06%), Query Frame = 0 
Query:    1 MKDRLAQLRDLQVQSDLPPEYEETNLSEEDKTNPFLNDFFSQIEVIQQDIRDIQDNVQEIKKKQSAILSAPQSGDKMKEELEQFMADITRSANRVKQILKGMEKSIKDQENSNQGNFADIRIKKCQHAALSREFVEVMTEYNKIQNDYRDKCKNRIKRQLEITNTEKSYTDEEVEEMIESKNPAIFTQGIITDTQQAKQSLREIEARHNDIIKLETSIRELHEMFTDMAILVQSQGEMIDRIEYNVEQAAEYVQRAVVDTKKAVRYQSKARRKKIMIAIC---LAVMLAPPMN 290
            MKDR  +LR  +   D      E  +   D+ + F+++FF Q+E I+  I  + ++V+++KK+ SAIL+AP   +K K+ELE   ADI ++AN+V+  LK +E+SI+ +E  N+ + AD+RI+K QH+ LSR+FVEVMTEYN  Q+ YRD+CK+RI+RQLEIT   ++ T+EE+E+M+ES   AIFT  I  D+Q  KQ+L EIE RHN+IIKLETSIRELH+MF DMA+LV+SQGEMIDRIEYNVE + +YV+RAV DTKKAV+YQSKARRKKIMI IC   L V+LA  + 
Sbjct:    1 MKDRTQELRSAKDSDD------EEEVVHVDR-DHFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSS-ADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITG--RTTTNEELEDMLESGKLAIFTDDIKMDSQMTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVVLGVVLASSIG 283
The following BLAST results are available for this feature:
BLAST of TCONS_00018972-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX1B1.137e-10354.95Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1[more]
back to top